Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_013055.1 Length=39896 Score E Sequences producing significant alignments: (Bits) Value seq1501 190 5e-44 seq280 154 4e-33 >seq1501 Length=377221 Score = 190 bits (210), Expect = 5e-44 Identities = 531/796 (67%), Gaps = 24/796 (3%) Strand=Plus/Minus Query 8375 TCACCGGAACGCCGACCGGATTTGTCGACTTAGAC-GCGCGACTCGACGGTATGCATGGC 8433 ||||||| || ||||| || |||| | ||| || ||| || || |||| | Sbjct 329230 TCACCGGCGTGCGCACCGGCTTCTACGACCTGGACCGCATGAC-CGCGGGCCTGCAGCGG 329172 Query 8434 GGTGAGTTGATTATCGTCGGCGGA-CGGCCGTCGATGGGAAAGACCTCCCTCGCAATGAA 8492 ||||| |||| ||| | ||||| |||||||| ||||| |||||| | |||| || || Sbjct 329171 GGTGACCTGATCATCCT-GGCGGCTCGGCCGTCCATGGGCAAGACCGCGTTCGCGATCAA 329113 Query 8493 TATCGCAGAGCATGTCGCCATCGTGTCGAGATTGCCCGTCGGCGTCTTGTCGCTGGAAAT 8552 |||| ||| || || ||| | | |||| ||| | ||| ||| ||||||| Sbjct 329112 CATCGGCGAGGCCGTGGCGATCAACGAGGGCCTGCCGGTCATCATCTACTCGATGGAAAT 329053 Query 8553 GCCGACCGAACAGTTGACCATGCGCATGCTGGCGTCGACATCCCGTATCAGCCAAAACAG 8612 | | | ||| || || |||| ||| | | |||| ||| ||| || | || Sbjct 329052 GGGCGCGGCGCAGCTGGCCTTGCGGATGGTCGGCTCGATCGGCCGCATCGATCAGAGCAA 328993 Query 8613 GCTGCGAACCGGTCGCCTCGAGGATGACGACTGGCCGCGCCTGACGCGTGGCG-TCGAGC 8671 ||||| ||||| ||||| |||| ||||| ||| || ||| | || |||| | || Sbjct 328992 CCTGCGCACCGGCCGCCTGAAGGACGACGAATGGGGCCGGCTGGC-CGAGGCGGTGGACA 328934 Query 8672 TGATGGCCGACGCGCCCGTGCATATTCTCGATAGCTCCG--CGATCACCCCGTCGAAATT 8729 | | | | ||||||| | | || ||| ||| | | | || ||| | |||| | Sbjct 328933 AGCTCGGCAACGCGCCGATCTACATCGACGAGAGCCCGGGCCTGTCGCCCAG-CGAAGTG 328875 Query 8730 CAAGTCCGAGTTGCGGCGCTTGTATCGCGAATGC--GGCCGGCTCGGGATGATTGTCGTT 8787 | | ||| | | | ||| | |||| || |||| | |||| |||| || | Sbjct 328874 CGCGCCCGCGC-GAGACGCCA--AGCGCGGATCTCGGGCCAGATCGGCCTGATCATCATC 328818 Query 8788 GACTACCTGCAGCTGATGTCGGGTGACGGCGGCGGATCTGAAATG---CGGGCCACCGAG 8844 |||||||||||||||||| || |||||||||| || || | ||||| || | | Sbjct 328817 GACTACCTGCAGCTGATGAGCGGCAACGGCGGCGGTTCCGAGGAGAACCGGGCGACGGTG 328758 Query 8845 GTCGCCGAAATATCGCGCGCACTCAAACAAATTGCGAAGGAACTCGACGTTCCGATCATC 8904 || | ||| || ||||| | || || | || ||||| || | ||| | ||| Sbjct 328757 GTGGGCGAGATCTCGCGGGGCCTGAAGGCGCTGGCCAAGGAGCTGCGCTGCCCGGTGATC 328698 Query 8905 GCGCTGTCGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAACAAGCGGCCCGTCATGTCC 8964 |||||||||||||| || || | | || | || || ||||||| || | |||||| Sbjct 328697 GCGCTGTCGCAGCTGAACCGCTCGGTGGAAACGCGGCCGGACAAGCGTCCGATGATGTCC 328638 Query 8965 GATCTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTGATCCTCTTTATCTACCGC 9024 || |||||||||||||| || ||||||||||| || ||| | ||| | || ||||||||| Sbjct 328637 GACCTGCGCGAGTCGGGCGCCATCGAGCAGGACGCGGACATCATCATGTTCATCTACCGC 328578 Query 9025 GATGAGGTCTATAACCCCGAC-AGCGCA--GATCGCGGTACGGCCGAAATCATCATTGCG 9081 || ||| ||| | | ||| || ||| || | || ||| || |||||||| || Sbjct 328577 GACGAGTACTACACCAAGGACGAGTGCAAGGAGCCGGGCGTGGCGGAGATCATCATCGCC 328518 Query 9082 AAGCAGCGAAACGGGCCGATTGGCACCGTACGGCTCGCATTCCAGAACGCAACA--ACCC 9139 |||||||| ||||| ||| | ||||| || ||| || ||| | ||| | | ||| Sbjct 328517 AAGCAGCGGAACGGCCCGGTGGGCACGGTGAAGCTGGCCTTC--GCGCGCCAGAACACCA 328460 Query 9140 GGTTCGAGAATTTCGC 9155 ||||||||| |||| Sbjct 328459 AGTTCGAGAACCTCGC 328444 >seq280 Length=85134 Score = 154 bits (170), Expect = 4e-33 Identities = 254/365 (70%), Gaps = 5/365 (1%) Strand=Plus/Plus Query 8744 GGCGCTTGTATCGCGAATGCGGCCGGCTCGGGATGATTGTCGTTGACTACCTGCAGCTGA 8803 ||||||| | ||| |||| || ||| || | ||||| || ||||| | || |||| Sbjct 11263 GGCGCTTACACCGCCAATGTGGAGAGCTGGGTTTAATTGTGGTGGACTATTTACAACTGA 11322 Query 8804 TGTCGGGTG----ACGGCGGCGGATCTGAAATGCGGGCCACCGAGGTCGCCGAAATATCG 8859 || | || | | || | || ||| | || || |||||| | | ||||| || Sbjct 11323 TGACAGGACCAGCAGGACGTCAGAG-TGAGAATCGTGCTACCGAGATATCTGAAATCTCA 11381 Query 8860 CGCGCACTCAAACAAATTGCGAAGGAACTCGACGTTCCGATCATCGCGCTGTCGCAGCTT 8919 ||| | | ||| | || || || || | || || | | ||| |||| ||| | Sbjct 11382 CGCTCTTTAAAATCGTTGGCAAAAGAGCTGAATGTGCCAGTAGTAGCGTTGTCACAGTTA 11441 Query 8920 AATCGAGGGCTCGAGAATCGCCCAAACAAGCGGCCCGTCATGTCCGATCTGCGCGAGTCG 8979 ||||| || | ||| | ||||| |||| || || || ||||| || |||| || || Sbjct 11442 AATCGTGGCTTGGAGCAACGCCCCGACAAACGTCCTGTGATGTCTGACTTGCGTGAATCT 11501 Query 8980 GGTGCGATCGAGCAGGATGCCGACGTGATCCTCTTTATCTACCGCGATGAGGTCTATAAC 9039 |||||||| ||||||||||| ||||| || || ||||| || || ||||| || |||||| Sbjct 11502 GGTGCGATTGAGCAGGATGCGGACGTTATTCTGTTTATTTATCGTGATGAAGTTTATAAC 11561 Query 9040 CCCGACAGCGCAGATCGCGGTACGGCCGAAATCATCATTGCGAAGCAGCGAAACGGGCCG 9099 || || ||| |||| || || || |||||||| ||||| |||||||| ||||| || Sbjct 11562 CCAGATAGCCCAGACAAAGGCACCGCTGAAATCATTATTGCCAAGCAGCGTAACGGCCCA 11621 Query 9100 ATTGG 9104 ||||| Sbjct 11622 ATTGG 11626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127542320882340