Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq100 542 4e-149 seq1490 84.2 3e-11 >seq100 Length=112360 Score = 542 bits (600), Expect = 4e-149 Identities = 696/960 (73%), Gaps = 0/960 (0%) Strand=Plus/Minus Query 7519 AGGAGTGTTCTCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCAT 7578 || || ||| ||| | |||||| || | |||||||| ||||||||||| || ||||| Sbjct 41153 AGTAGAGTTAACAGAAAAAGCAAGATCTAATGGGAAGTTATGAGCATTACGTTCATGCAT 41094 Query 7579 GACTTCCATGCCAAGACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACC 7638 ||||| || |||||| || | ||| | | |||||||| ||||| | || | || Sbjct 41093 TACTTCGATTCCAAGATTTGCTCTGTTTACAATATCTGCCCAAGTGTTAATTACTCTTCC 41034 Query 7639 TTGACCATCAATGATGGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCT 7698 ||| | |||||| || || || || ||||| || ||||| | ||| || ||||| || || Sbjct 41033 TTGGCTATCAATAATCGATTGATTAAAGTTAAATCCGTTTAAGTTAAAGGCCATTGTACT 40974 Query 7699 AACACCAAGAGCAGTGAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAG 7758 || || | ||||| ||||| || ||||| ||||||||||| || | ||||||||| | Sbjct 40973 AATTCCTAATGCAGTTAACCAAATTCCAACTACTGGCCATGCAGCTAAGAAGAAGTGTAA 40914 Query 7759 CGAACGGGAGTTGTTGAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGC 7818 ||||| ||||| || || |||||||| || || | | || || ||||||||||| Sbjct 40913 TGAACGTGAGTTATTAAAACTTGCGTATTGAAAAATTAATCTTCCGAAATATCCGTGAGC 40854 Query 7819 AGCAACGATGTTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTC 7878 |||||| || || || || ||||||||||| || || || || ||||| || | || || Sbjct 40853 AGCAACAATATTATATGTTTCTTCTTCTTGTCCAAATTTGTATCCATAATTTGGTGATTC 40794 Query 7879 AGACTCAGTGGTTTCACGAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAA 7938 |||| |||||||||| | || || ||||| | || || ||||| ||| || Sbjct 40793 GCTTTCAGAAGTTTCACGAATAATTGATGAAGTTACTAAAGATCCGTGCATTGCAGAAAA 40734 Query 7939 CAGAGAACCACCAAAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTT 7998 | ||||| ||||| || ||||| || || |||||| || || ||||| | ||||| Sbjct 40733 TAATGAACCTCCAAAAACTCCAGCTACACCAGCCATGTGAAATGGATGCATTAATATGTT 40674 Query 7999 GTGCTCTGCTTGGAAGACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGC 8058 ||||| |||||||| || | |||| |||| || || || || || || | ||||||| | Sbjct 40673 ATGCTCGGCTTGGAAAACTAACATGAAGTTAAAAGTCCCTGAAATCCCTAAAGGCATACC 40614 Query 8059 GTCAGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAAC 8118 ||||| ||| ||||| || | ||||| | | ||||||||| | ||||||||| || Sbjct 40613 ATCAGAAAAACTTCCTTGTCCTATCGGATAAATTAAGAATACAGCTGTTGCTGCAGCTAC 40554 Query 8119 TGGAGCAGAGTATGCTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCA 8178 |||||| || | || ||| | ||||| || ||||| |||| || | | |||||| Sbjct 40553 TGGAGCGGAAAAGGCAACAAAAATCCAAGGGCGCATTCCTAAGCGAAAGCTTAATTCCCA 40494 Query 8179 CTCACGACCCATGTATGCATAGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGG 8238 ||||||||| | || | | ||| | | |||||| || | | ||||| | || Sbjct 40493 CTCACGACCTAAATAACAAGCTACACCTGTTAAGAAGTGTAATACTATCAGTTGATATGG 40434 Query 8239 ACCACCGTTGTAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAG 8298 ||||||||| || | ||| ||||||| |||||| |||||||| || ||||| || || | Sbjct 40433 ACCACCGTTATATAACCATTCATCAATAGAAGCAGCTTCCCATATAGGATAAAAATGAAC 40374 Query 8299 ACCAATAGCGTTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAG 8358 |||||| ||||| ||| ||||| || | || | || |||||||| ||||| | || Sbjct 40373 ACCAATTGCGTTTGAACTAGGAATAATTGATCCTGTAATAATGTTGTTTCCATATAATAG 40314 Query 8359 CGAACCAGCGACGGGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGC 8418 || ||||| || || || || || || |||||||| || |||||||| |||| ||| | Sbjct 40313 GGATCCAGCTACTGGCTCGCGAATTCCATCAATGTCTACTGGAGGAGCTGCGATAAAACC 40254 Query 8419 GACGATGAAACAAATAGCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACC 8478 || |||||||| ||| ||| | | |||||||||||||||| || |||||||| || Sbjct 40253 GATAATGAAACATGTAGTAGCTGTTAAAAGCGTAGGAATCATCACAACTCCGAACCATCC 40194 Score = 468 bits (518), Expect = 6e-127 Identities = 720/1014 (71%), Gaps = 16/1014 (2%) Strand=Plus/Minus Query 6258 ATCACAGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTT 6317 |||| || ||||| || | ||| ||||| ||||| ||||||| | | ||||||||||| | Sbjct 29591 ATCAAAGCGCGTTTCCACGTGGTAATACCTCTTCTGGAAATATATAATTTTCATGTGGCT 29532 Query 6318 GATCCACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGA 6377 | || || |||||||| | || |||||||| || | || || || ||||||| Sbjct 29531 GGTCTTGTGCAGCCATCCATAATCTTATTCCTTCATTTAAAATAATATTTTTTGTATAGA 29472 Query 6378 ACGTCTCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTC 6437 | || ||||| || ||||| || ||||||| | ||||| |||| ||||||||| || | Sbjct 29471 ATGTTTCGAATTCCGGATCTTCTGCTGCTCGTAATTCTTGCGAAATAAAGTCATAGGCGC 29412 Query 6438 -TAAGGTTAAGTGCAAGACCAATAATACCAAT---GCTAGAGGTCCAAAGACCCATAACA 6493 |||| |||| |||||| || | ||| || || ||| | ||| | ||| | ||| Sbjct 29411 GTAAGTTTAA-TGCAAGTCCTACAATTCCTATTGCGCTTGC---CCATAAACCGGTTACA 29356 Query 6494 GGAACAAACAGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATC 6553 |||||||| |||||||| || |||| ||| | |||||| || || | ||||| || Sbjct 29355 GGAACAAATAGCATAAAAAAGTGTAACCATCTTTTATTGGAAAAAGCTACTCCAAAAATT 29296 Query 6554 TGAGACCAGAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCA 6613 || ||||| || | || || || ||||| ||||| || || || ||| ||||| | Sbjct 29295 TGTGACCAAAATCTGTTGGCTGTAACCATGGAATATGTTTCTTCCGATTGAGTAGGGGTA 29236 Query 6614 AACGCCTTGAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCA 6673 || || | || ||||||| | || ||||||||| | | |||||| || ||||||||| Sbjct 29235 AAGGCTCTAAATGTATTTGCTGCATCTCCATCTTCATAAAGAGTATTTTCAACAGTAGCA 29176 Query 6674 CCGTGAATAGCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAAC 6733 || ||||| ||||| || || || | ||||| | || || || ||||||||||| || Sbjct 29175 CCATGAATTGCACATAGTAACGCAGCTCCTAATACTCCAGCAACTCCCATCATATGGAAT 29116 Query 6734 GGGTTGAGCGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCA 6793 || || | ||||| || ||||| || |||| ||| ||||| || || || || |||||| Sbjct 29115 GGATTTAATGTCCAATTATGGAATCCTTGTAAGAATAGTAAAAATCGAAAAATTGCTGCA 29056 Query 6794 ACACCAAACGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACA 6853 |||||||| || ||||| ||||| || | || || | |||||| | | ||| || Sbjct 29055 ACACCAAAACTTGGTGCAAAAAACCAGCTTGCTTGCCCTAAAGGATAAAGTAAAAAAACG 28996 Query 6854 GACACAAAGACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACT 6913 || ||||| | || || || | ||||| || | |||||||| || ||||| || ||| Sbjct 28995 GAAACAAAAATGGCGATCGGTGCTGAAAATGCTAAAGCATTGTAAGGTCGAATTCCTACT 28936 Query 6914 AGACGTGCGATCTCAAACTGCCG-AAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAG 6972 | || || || ||||| || || ||||| || || || || ||||| |||||||| | Sbjct 28935 AATCGAGCAATTTCAAATTGTCGTAAGCAA-AATCCAATTAGTGCAAAAGCTCCGTGTAA 28877 Query 6973 CGCCACAAAAGGCCATAGTCCCCCAAGTTGGAGCCAG-CGGACGAAATCTCCCTGAGCTT 7031 || ||||| | ||| || || |||| || | ||| | || |||| ||| || |||| Sbjct 28876 GGCAACAAATGTCCAAAGACCTCCAATTTTAAACCATACAGAA-AAATTTCCTTGCGCTT 28818 Query 7032 CTGGACCCCATAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAG 7091 |||| ||||||| |||||||| |||||||| | | | ||| || ||||| ||||||| Sbjct 28817 CTGGTCCCCATAAAAGAAGTAAAGAATGTCCCATACTATTAGCTGGTGTTGAAACAGCAG 28758 Query 7092 CAGTAAGGAAATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCG 7151 | || | |||||||| || || | | | || ||| | || || || ||||| | Sbjct 28757 CCGTTAAAAAATTACAACCTTCTAAAAAGGAGCTAGCTAAGCCATGGGTATACCAAGAGG 28698 Query 7152 TGACGAAAGTTGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAAC--AG 7209 | || || || | || || | ||| || || || || | || || | | |||| | Sbjct 28697 TAACAAATGTGATTCCAGTAAACCATCCTCCTAGAGCTAAATACGC-GCACGGAAATAAT 28639 Query 7210 AAGAAGACCTGACCAACCAACAAAAACGAACCTATCACGCTTAAGCCAGTCATC 7263 || || ||| ||||| || ||||| || || || || || ||||||||||| Sbjct 28638 AATAA-ACCAGACCATCCTACAAATACAAATCTGTCTTTTTTTAGCCAGTCATC 28586 >seq1490 Length=214893 Score = 84.2 bits (92), Expect = 3e-11 Identities = 101/138 (73%), Gaps = 7/138 (5%) Strand=Plus/Minus Query 176321 TCGAACTCCTGACAGCCTGCTTGCAAAGCAGGTGCTCTACCAACTGAGCTAATTCCCC-- 176378 |||||| |||| ||||||||||||||||||||||| ||| ||||||||| |||| Sbjct 76346 TCGAACCGTTGACCCCCTGCTTGCAAAGCAGGTGCTCTCCCAGCTGAGCTAAACCCCCGA 76287 Query 176379 -----TGGAGCCACAAGTCGGACTTGAACCGACGACCTACGGTTTACAAAACCGTTGCTC 176433 ||| | | || || || ||||| |||||| || ||| || || ||||| Sbjct 76286 AACCTTGGTGGGTCTGGTTGGGCTCGAACCAACGACCCCCGCGTTATCAACACGGTGCTC 76227 Query 176434 TATCCAGCTGAGCTATAG 176451 || |||||||||||| || Sbjct 76226 TAACCAGCTGAGCTACAG 76209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622107963747600