Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1301 170 2e-37 seq1526 114 2e-20 seq368 105 8e-18 seq1342 91.5 2e-13 seq1177 87.8 2e-12 >seq1301 Length=515170 Score = 170 bits (188), Expect = 2e-37 Identities = 498/761 (65%), Gaps = 16/761 (2%) Strand=Plus/Plus Query 116235 CAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATT 116294 || ||| || |||| || | ||||| || || | ||||| || ||||| | |||||| Sbjct 332166 CAGAATGAAAGCATCAGCTAATCCTTGAACTCCAATACCAATGGGACGATGACGCATATT 332225 Query 116295 AGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTT 116354 ||| ||||| || || || ||| |||| || || | | ||| | || || Sbjct 332226 AGAACGACGAGCCTGTTCAACTGGGTAATAATTGACGTCAATGATACGATTCAAGTTCTT 332285 Query 116355 GGTGACAACCTTTGTGA----TTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTT 116410 |||||||||||| | | ||||| | |||| | |||||||| || ||| | Sbjct 332286 GGTGACAACCTTGGCAACATGTTTCA--ATTCTTT--GAAATCAAAAGTGT---TCTTAT 332338 Query 116411 CATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTAT 116470 | |||||| | ||| | || || || |||| ||| || |||| ||||||| | Sbjct 332339 CCTTGACAAAGGCAGGCAAAGCAATAGAAGCCAAATTGCAAACAGCAATCTCATCAGGAG 332398 Query 116471 CAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTT 116530 | | ||| || | |||||| ||||||||||| |||| || ||||| |||||||| | || Sbjct 332399 CCGAGTATTCAACAATTTCAGTACACAAATTGGAACATTTGATGGTTCCCAAGTTTTGTT 332458 Query 116531 GATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTT 116590 |||| ||| | || || ||||||||||| ||||| || || || || || || || Sbjct 332459 GATTGCTCTTGGAATTGCAAGCATCCTTGTACAGCATGTAAGGAGTACCAGTTTCAACTT 332518 Query 116591 GGGACTTGAGAATAGCCTTCCATACATCGGCGGCTGGCACAGTGGCGTTG-GCTCGCCCC 116649 | || | | |||||| ||||| | | || | ||| || | || | || Sbjct 332519 GAGATTCCAAAATAGCATTCCAAAGCTTTTGAGCACGAACA-ACACGACGAGCATGACCT 332577 Query 116650 TCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCT 116709 || | |||||||| ||| || || ||||| || ||||| | | || || | || Sbjct 332578 TCATTTTCGTACTTCTCGTAAAGAGCTTCAAATTCAGCACCCCAAACATCAGACAAACCA 332637 Query 116710 GGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAG 116769 || | || ||| |||||||| ||||| | | | | ||||| ||||||||||| Sbjct 332638 GGACATTCATTTGGGCAGAAGAGGGACCAGTCTTCGTCAGCTTCAACACGCTTCATGAAC 332697 Query 116770 AGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGA 116829 | || ||||| | || |||| | || ||| ||| ||||||| | ||| Sbjct 332698 AAATCATTAATCCACAAAGCATAGAACAAGTCACGAGCACGAACTTCTTCCTTCCCAGTG 332757 Query 116830 TTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCG 116889 || ||| ||||||||||| | | || |||||||||||||||| ||| || || Sbjct 332758 TTCTTCTTCAAATCCAAAAAGTCAAAAACGTCAGCGTGCCACGGTTCCAAGTAGACGGCA 332817 Query 116890 ATTGACCCCTTGCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACG 116946 | | ||| || | |||| | || | || || | ||||| || | || Sbjct 332818 AAAGCACCCGGACGCTTATTACCACCTTGATCAACGTAACGAGCCGTGTTATTGTAAACA 332877 Query 116947 CGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCC 116987 |||||||| |||| | ||||| ||||| ||||| || || Sbjct 332878 CGAAGCATGGGAACAAGACCATTGGATTGACCATTCGTGCC 332918 >seq1526 Length=132622 Score = 114 bits (126), Expect = 2e-20 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591 || ||||| ||||||||| ||| |||||||| |||||| || ||| ||||| | || Sbjct 118704 TGAAGACCTTCGTCACGGCTGATTAGTTCATTGGAGAAGGTCAAACCGGGCATCAACCCG 118763 Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651 |||||||||||||||||||| ||| |||||| || || |||||||| || ||||| Sbjct 118764 CGCTTCTTCAACCAGAAAATGGCAGCAAATGAACCGGAAAAGAAGATACCTTCCACGGCA 118823 Query 127652 GCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTG--TATCAAACCACTTCATCG 127709 || || |||| || || || |||| ||| | |||| | |||| ||| ||| | Sbjct 118824 GCAAAAGCAACAAGGCGTTCTCCAAAACAGC--TAGTTTGATTTTCAATCCAACGCATAG 118881 Query 127710 CCCACTGTGCCTTTTTCTCGATACATGGGACGGT 127743 |||| | | |||| || | ||| |||| ||| Sbjct 118882 CCCAGTCTCCCTTCTTGCGAACACAAGGGATGGT 118915 >seq368 Length=262043 Score = 105 bits (116), Expect = 8e-18 Identities = 350/539 (65%), Gaps = 13/539 (2%) Strand=Plus/Plus Query 127221 CCAGCTTGCC-GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTG 127279 ||||||| | ||| || || || || ||||| || ||||||||||| || | ||| | Sbjct 27990 CCAGCTTTCGAGTATTCTCCAACGCGTTTCTCAAAAAAGTTTGTCTTGCCCTGGAGAGAG 28049 Query 127280 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGT 127339 || | ||||| |||| ||||||||||||| | | || | | || || | | Sbjct 28050 ATCATGTCCATCCAATCGAATGGGTTCTTTGCATGGTAGATCTTGGATACTCCCAGCGAG 28109 Query 127340 TTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCG 127399 | || |||||||| | || | ||||||||| |||| | |||||||| || Sbjct 28110 TAAAGCAGACGATCAGCCACAAATTCAATGTACAGGCACATGAGGCCCGAGTTCATGCCA 28169 Query 127400 ATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGT 127459 || || | ||||||| ||| | |||| | | ||||| ||||||| || || Sbjct 28170 ATCAGCTCGACCGGGAGCGAGTCACGCACGAACTCGTGTTCAATCGCCACAGCATCGCGA 28229 Query 127460 ACGATGGCGTGAATAGTGTCCACCC-CAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCAC 127518 | ||| |||| | || | ||| | | | | | | ||| |||| | | Sbjct 28230 ATGATTTCGTGCACGCGGTATTCTGGCAGCT---TGGTGACCAAT-TTG--GAGTACAAA 28283 Query 127519 AG-----CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCAC 127573 || |||| || ||| | ||||||||| ||| || || || || || |||| Sbjct 28284 AGGCACGCAAAGTCCGTGTGCATACCCTCGTCCCGGCTAATAAGCTCGTTTGAAAAGCTT 28343 Query 127574 AGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAG 127633 ||||| ||||| | ||| |||||||| | ||| || || | || |||||||||||||| Sbjct 28344 AGACCAGGCATTAAACCGCGCTTCTTGAGCCAAAAGATGGAGCAGAATGAGCCAGAGAAA 28403 Query 127634 AAGATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTA 127693 || || || || || || || || || || || || | | |||| | | || | Sbjct 28404 AAAATGCCTTCAACTGCAGCAAAGGCCAAAAGCCGTTCTGGATAGGAAGAGACCCGTGGA 28463 Query 127694 TCAAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 || ||||||||| ||||| || || ||||| || || |||| |||| ||| || Sbjct 28464 TCGCACCACTTCAGAGCCCAGTGCGCTTTTTTGGTGACGCAAGGGATAGTCTCGATAGC 28522 >seq1342 Length=132421 Score = 91.5 bits (100), Expect = 2e-13 Identities = 222/333 (67%), Gaps = 5/333 (2%) Strand=Plus/Minus Query 116640 GGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTC 116699 ||| || || |||| ||||||| ||| | || ||||||| | |||||| | || Sbjct 2353 GGCACGGCCTTCCTGTTCGTACTGGACGTACAAGGTCTCAAACGCGTCACCCCAACATTC 2294 Query 116700 TGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCG 116759 | || || || || | | ||||| |||||| ||| ||| | || || || Sbjct 2293 GTACAGACCCGGCGCTTCGTTGGGACAAAAGAGACTCCACGTGCCATTGGCTTCCACGCG 2234 Query 116760 CTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGA-GCTTCTT 116818 |||||| ||||| ||||||| ||| | || | || | ||||||| ||| || || Sbjct 2233 CTTCATAAAGAGATCTGGGACCCACAAGGCAAAAAACAAATCCCGAGCACGATGCAACT- 2175 Query 116819 CATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCA 116878 | | || || || |||||||| | ||| || | | ||| |||||||| || || | Sbjct 2174 CGTTGCCGTGGTTTTTCCGCAACTCTAGAAATTCAAACACATCAGCGTGCCAGGGCTCTA 2115 Query 116879 GGTACACCGCGATTGACCCCTTGCGA---CGACCAGCCTGGTTTACATACCTCGCCGTTG 116935 | || | || | || || ||||| | ||| | || | || |||| |||||| Sbjct 2114 GATAGATGGCAAACGAGCCTTTGCGTTTCCCGCCACCTTGATCGACGTACCGCGCCGTGT 2055 Query 116936 CGTTAAATACGCGAAGCATTGGAATGATACCAT 116968 | ||||| ||||| | |||||||||||| |||| Sbjct 2054 CATTAAAGACGCGCAACATTGGAATGATGCCAT 2022 >seq1177 Length=179586 Score = 87.8 bits (96), Expect = 2e-12 Identities = 167/246 (68%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 163370 TCGCGTGGCACCAAGATCTGGTCTCGCTGTGAAGAGCGGTATCCAAGTTGGTGCGGGTGT 163429 |||| | || || | ||||| ||||||| |||| | |||| | || ||||| ||||| Sbjct 174392 TCGCATTGCCCCTCGTTCTGGACTCGCTGCCAAGAACTTTATCGACGTCGGTGCTGGTGT 174333 Query 163430 TGTGGATCCAGACTACACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGACACATGGA 163489 || ||| ||||||| ||| | |||| || | || ||||| | | | | || Sbjct 174332 AGTTGATGAAGACTACCGTGGTAACGTCACCGTAATCCTTTTCAACTTCAGCAAAACTGA 174273 Query 163490 TTTCCAAATCAAAAAGGGGGATCGCATCGCGCAACTCATCTTAGAGAGGTGTGAGACACC 163549 ||| || ||||||||||| ||||| |||||| | |||| || | | || | | Sbjct 174272 TTTTGTCATTAAAAAGGGGGACCGCATTGCGCAATTGGTCTTGGAAAAGATTGCCATGGC 174213 Query 163550 CCAAGTTGAAGAAATTGGTGCGGTTGAGGAGACCGAGAGAGGTTCGGGTGGATTCGGTTC 163609 ||||||||||||| | || |||| || || | ||| | ||||| |||||||| Sbjct 174212 TCAAGTTGAAGAAACCGATGACCTTGACGAAACTATTCGTGGTGCCGGTGGTTTCGGTTC 174153 Query 163610 TACAGG 163615 ||| || Sbjct 174152 TACTGG 174147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613490596961400