Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_013650.1 Length=155445 Score E Sequences producing significant alignments: (Bits) Value seq1390 87.8 2e-12 >seq1390 Length=268060 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/146 (74%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 113818 GGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTCG 113877 ||||||||||| || || | || |||||||||||| | ||||| || |||||| Sbjct 43892 GGCCCGGGCCGGGGATCGGGCGCGGGCTCGCTGGTCGCGTACGTGCTGCTGATCACCGAC 43833 Query 113878 ATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTCATCAACCCGGACC--GCCCCG 113935 | |||||| | ||||| ||||| |||||||||| ||| | |||||||| | | || Sbjct 43832 CTGGACCCGCTGCAGTACAACCTGCTGTTCGAGCGTTTCCTGAACCCGGAGCGGGTGTCG 43773 Query 113936 ACTTCCCCGACATCGACGTCGACTTC 113961 | | || ||| ||||| |||||||| Sbjct 43772 A--TGCCTGACTTCGACATCGACTTC 43749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 497282541927000