Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq312 116 6e-21 seq1301 86.0 1e-11 >seq312 Length=309945 Score = 116 bits (128), Expect = 6e-21 Identities = 166/230 (72%), Gaps = 8/230 (3%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCA---GGCCTGCTTCTCAGATAGTACAT 203895 ||| ||||| || |||||||| |||| |||| || | | | || |||||||| Sbjct 16738 CTTATCCACGGTAAACTGAATCGCGT---CGGCTTTCGGTCGTCCCCGCATGTAGTACAT 16794 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955 ||| ||||| || || || | |||| |||| | ||||||||| | |||||||| | | Sbjct 16795 GCCCGTCTTGAGCCCTTTTTTCCACGCGTAAAAGTGCATGGACGTGAGTTTGCTAATCGT 16854 Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTG 204014 ||||| || ||||||||||||| || || || | | | | ||| ||||| ||||| | Sbjct 16855 CGGGTCCGCAATGTGAATGTTCAACGATTGACTCT-GACAAATAAACGCGCCACGATCCG 16913 Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAAC 204064 ||| || || || | || ||| ||| ||||||||||| |||||| || Sbjct 16914 CGGACAGATCGAGCACGGCCTTTTGCTTGATCTCCCACACTGTCTTGTAC 16963 >seq1301 Length=515170 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 203888 TAGTACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTG 203947 || ||||| || ||||| | || || ||| ||||| | ||||| |||| || || Sbjct 331495 TAATACATACCAGTCTTCAAACCAAGCTTCCAACCGTAAAAATGCATTGAAGTCAACTTC 331554 Query 203948 CTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC 204007 | | | || ||||| ||||||||||||| | || ||||| || ||||||| | Sbjct 331555 GAAAAGGTTGGTTCGGCAATGTGAATGTTCAAACTTTGACTTTGATCAATGAAAGCACCA 331614 Query 204008 CGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACG 204067 ||||| || |||| | |||||| || || ||||| ||||| || |||||| ||| | Sbjct 331615 CGATCAGCAGCCAAGTCAATAATGACTTTTTGAGAAATTTCCCAAACTGTCTTGTACAAG 331674 Query 204068 TC 204069 || Sbjct 331675 TC 331676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795133681112400