Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1422 161 2e-34 seq1355 145 2e-29 seq1775 125 2e-23 seq1110 104 6e-17 >seq1422 Length=277306 Score = 161 bits (178), Expect = 2e-34 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||| || ||||||| || | ||||||||||||||||| | || || Sbjct 271306 AGCACCAGGTGGAGCGTACACTCCTTCTGTATATTGTAGTCAGCCAAAGTACGACCGTCC 271247 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| ||||| || || ||||||||||| || || ||||||||| ||| Sbjct 271246 TCGAGCTGCTTGCCGGCAAATATCAGACGCTGCTGATCAGGTGGAATTCCTTCCTTGTCC 271187 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||||||||| ||| |||| | ||| | | ||| || ||||| ||||||||| Sbjct 271186 TGGATCTTTTGCTTTACGTTATCGATCGAGTCCGAAGGTTCCACGTCCAAAGTGATCGTC 271127 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| || || |||||||| Sbjct 271126 TTACCAGTCAGAGTCTTGACGAAAATTTG 271098 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||| || |||||||| || | ||||||||||||||||| | || || Sbjct 271534 AGTACCAGGTGGAGCGTAGACTCCTTCTGAATATTGTAGTCAGCCAAAGTACGACCGTCC 271475 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || ||||| ||||||||||| || || ||| ||||| ||| Sbjct 271474 TCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGTGGAATGCCTTCCTTGTCC 271415 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||||||||| || |||| | || | | || || |||| ||| |||||| Sbjct 271414 TGGATCTTTTGCTTTACATTGTCGATCGAATCCGAGGGCTCCACGTCCAGCGTAATCGTC 271355 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || | ||| || ||||||||||| Sbjct 271354 TTACCAGTCAAAGTCTTTACAAAAATTTG 271326 Score = 93.3 bits (102), Expect = 1e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||| || |||||||| || | ||||||||||||||||| | || || Sbjct 271862 AGCACCAGGTGGAGCGTAGACTCCTTCTGTATATTGTAGTCAGCCAAAGTACGACCGTCC 271803 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 || |||||||| || || ||||| ||||||||||| || || Sbjct 271802 TCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGG 271762 >seq1355 Length=184863 Score = 145 bits (160), Expect = 2e-29 Identities = 157/207 (76%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC-CTTCCATCTTC 199479 |||||||| || ||||||||||| |||| ||||||||| |||||| | || || || Sbjct 91131 ACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTTACGGCCGTCCTC 91190 Query 199480 CAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTG 199539 || |||||| || || || || ||||| |||||||| || ||||||||| ||||| Sbjct 91191 CAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCCTG 91250 Query 199540 AATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTT 199599 |||||| ||||||||| |||| | ||| | || ||||| || | ||||| ||||| Sbjct 91251 AATCTTCTGCTTCACGTTATCGATCGAGTCAGATGGCTCTACGTCGAGAGTGATTGTCTT 91310 Query 199600 ACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || |||||||| || Sbjct 91311 TCCCGTCAGCGTCTTTACAAAAATCTG 91337 Score = 136 bits (150), Expect = 9e-27 Identities = 155/207 (75%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTT-TGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTC 199479 |||||||| || |||||||||||| |||| ||||||||| |||||| | || || || Sbjct 90902 ACAAGGTGAAGGGTCGACTCCTTTCTGGATGTTGTAGTCGCTCAAAGTACGGCCGTCCTC 90961 Query 199480 CAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTG 199539 || |||||| || || || || ||||| |||||||| || ||||||||| ||||| Sbjct 90962 CAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCCTG 91021 Query 199540 AATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTT 199599 |||||| ||||||||| |||| | ||| | | || || || | ||||| ||||| Sbjct 91022 AATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCAACGTCAAGAGTGATTGTCTT 91081 Query 199600 ACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| | ||| || || ||||| || Sbjct 91082 TCCCGTCAAAGTCTTGACGAAAATCTG 91108 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 |||||||| || ||||||||||| |||| ||||||||| || ||| | || || ||| Sbjct 90674 ACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTCCTCC 90733 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 | |||||| || || || || ||||| |||||||| || ||||||||| |||||| Sbjct 90734 AACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCCTGA 90793 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 ||||| ||||||||| |||| | ||| | | || || || | ||||| ||||| Sbjct 90794 ATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCAACGTCAAGAGTGATTGTCTTT 90853 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| | ||| || || ||||| || Sbjct 90854 CCCGTCAAAGTCTTGACGAAAATCTG 90879 Score = 109 bits (120), Expect = 1e-18 Identities = 151/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 |||||||| ||||||||||| || |||| ||||||||| || ||| | || || ||| Sbjct 90446 ACAAGGTGAAGAGTCGACTCTTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTCCTCC 90505 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 | |||||| || || || || ||||| |||||||| || ||||||||| |||| | Sbjct 90506 AACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCCTAA 90565 Query 199541 A--TCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCT 199598 | |||| |||||||| |||| | ||| | | || || || | || || |||| Sbjct 90566 ATTTCTTCTGCTTCAC-TTGTCGATCGAGTCGGAAG-CTCAACGTCAAGAGTAATAGTCT 90623 Query 199599 TACCCGTGAGAGTTTTCACAAAAATTTG 199626 | ||||| | ||| || |||||||| || Sbjct 90624 TTCCCGTCAAAGTCTTGACAAAAATCTG 90651 >seq1775 Length=332822 Score = 125 bits (138), Expect = 2e-23 Identities = 157/215 (73%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 || ||||| || ||||| || || || | |||||||| |||||||||| |||||||| Sbjct 274980 ACGAGGTGCAGCGTCGATTCTTTCTGAATATTGTAGTCTGCCAAAGTCCGGCCATCTTCG 274921 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 |||||||| || || ||||| |||||||||||||| || ||| ||||| |||||| Sbjct 274920 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATCCCTTCCTTGTCCTGA 274861 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 || || || || || || | | | || | | || || |||| ||| || ||||| Sbjct 274860 ATTTTCTGTTTGACATTGTCAATGCTATCCGAGGGCTCCACGTCCAGCGTAATGGTCTTG 274801 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||||| || || || || ||||| || |||||| Sbjct 274800 CCCGTCAGGGTCTTGACGAAAATCTG---CATTTT 274769 >seq1110 Length=486086 Score = 104 bits (114), Expect = 6e-17 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 ||||||| | ||||||||| || | | | |||||||| || ||||| || || |||| Sbjct 256292 CCTTTTGAATGTTGTAGTCCGCAAGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAGA 256233 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | | |||||||||||| || ||| ||||| ||||| || || ||||| || | Sbjct 256232 TCAAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTACATTGT 256173 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 | | | |||||| | ||| || |||| ||| || ||||| ||||| | || || |||| Sbjct 256172 CAATGCTGTCTGACGGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTCTTGACAA 256113 Query 199620 AAATTTG 199626 |||| || Sbjct 256112 AAATCTG 256106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178888897820055