Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1422 136 4e-27 seq1110 116 4e-21 seq1775 111 2e-19 seq1355 93.3 5e-14 >seq1422 Length=277306 Score = 136 bits (150), Expect = 4e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | ||||| | |||||| || | |||| |||||| || ||||||||||| | Sbjct 271323 TGCCTCCGCGCAAACGAAGCACCAGGTGGAGCGTACACTCCTTCTGTATATTGTAGTCAG 271264 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | ||| || |||| ||||||||||||||||| ||||||| |||||||| || | | Sbjct 271263 CCAAAGTACGACCGTCCTCGAGCTGCTTGCCGGCAAATATCAGACGCTGCTGATCAGGTG 271204 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | ||||||||| |||||| | ||| | | | | || ||| | ||||| Sbjct 271203 GAATTCCTTCCTTGTCCTGGATCTTTTGCTTTACGTTATCGATCGAGTCCGAAGGTTCCA 271144 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 | |||| ||||| || || || ||||| || || || || ||||||||| Sbjct 271143 CGTCCAAAGTGATCGTCTTACCAGTCAGAGTCTTGACGAAAATTTGCATT 271094 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | ||||| | ||||| || | ||| |||||| || ||||||||||| | Sbjct 271551 TGCCTCCGCGCAAACGAAGTACCAGGTGGAGCGTAGACTCCTTCTGAATATTGTAGTCAG 271492 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | ||| || |||| |||||||||||||| || || |||| |||||||| || | | Sbjct 271491 CCAAAGTACGACCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGTG 271432 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| |||||| | ||| | | | | || || | |||| Sbjct 271431 GAATGCCTTCCTTGTCCTGGATCTTTTGCTTTACATTGTCGATCGAATCCGAGGGCTCCA 271372 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| ||| || || || || |||| || || ||||| |||||||| Sbjct 271371 CGTCCAGCGTAATCGTCTTACCAGTCAAAGTCTTTACAAAAATTTGCAT 271323 >seq1110 Length=486086 Score = 116 bits (128), Expect = 4e-21 Identities = 142/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 ||||||| || |||||||| | || | || | || || || |||||||| || || | Sbjct 256292 CCTTTTGAATGTTGTAGTCCGCAAGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAGA 256233 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 |||| ||||||||||| | ||| | || ||||||||| ||| |||| ||| | | | | Sbjct 256232 TCAAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTA-CATTG 256174 Query 46524 CCACCG-TGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 || | |||| || |||||| |||| ||| ||||| |||||||||| ||| || ||| Sbjct 256173 TCAATGCTGTCTGACGGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTCTTGACA 256114 Query 46583 AAGATTTGCAT 46593 || || ||||| Sbjct 256113 AAAATCTGCAT 256103 >seq1775 Length=332822 Score = 111 bits (122), Expect = 2e-19 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||| || |||| || || || || ||||||||||| | | ||| || | Sbjct 274987 ACGCAACACGAGGTGCAGCGTCGATTCTTTCTGAATATTGTAGTCTGCCAAAGTCCGGCC 274928 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || |||||||||||||| || || |||| ||||||||||||| || | | ||||| Sbjct 274927 ATCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATCCCTTCCTT 274868 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCG-TGTCGCTCGATTCCACATCCACCGTGA 46556 |||| || |||| |||| | | | || | | || | ||||| |||| ||| | Sbjct 274867 GTCCTGAATTTTCTGTTTGA-CATTGTCAATGCTATCCGAGGGCTCCACGTCCAGCGTAA 274809 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 |||| ||||||||||| || || || || || |||||||| Sbjct 274808 TGGTCTTGCCCGTCAGGGTCTTGACGAAAATCTGCATTTT 274769 >seq1355 Length=184863 Score = 93.3 bits (102), Expect = 5e-14 Identities = 160/231 (69%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||||||||| || || | || |||||| ||||| ||||||||| Sbjct 91111 TGCCTCCACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGC 91170 Query 46425 ATAGAGTG-CGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCC 46483 | ||| || |||| || | ||||||||| || || || | || |||||||| | Sbjct 91171 TCAAAGTTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGT 91230 Query 46484 GGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCC 46543 || | | ||||||||| ||||||| ||| | | | | || ||| | || Sbjct 91231 GGAATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTATCGATCGAGTCAGATGGCTCT 91290 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || || | ||||| || || ||||||||||| || ||||| || |||||| Sbjct 91291 ACGTCGAGAGTGATTGTCTTTCCCGTCAGCGTCTTTACAAAAATCTGCATT 91341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565223103235800