Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq1422 91.5 1e-13 >seq1422 Length=277306 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || |||||||| || |||| || | || | || || |||||||| || || || Sbjct 271322 GCCTCCGCGCAAACGAAGCACCAGGTGGAGCGTACACTCCTTCTGTATATTGTAGTCAGC 271263 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 |||| || | || || | || || ||| |||| || | |||||||||||| | || Sbjct 271262 CAAAGTACGACCGTCCTCGAGCTGCTTGCCGGCAAATATCAGACGCTGCTGATCAGGTGG 271203 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | ||||| ||||| || ||||| || | | | | | ||| | |||||| Sbjct 271202 AATTCCTTCCTTGTCCTGGATCTTTTGCTTTACGTTATCGATCGAGTCCGAAGGTTCCAC 271143 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||||||| || || ||||| || | ||| || ||||| || ||||| Sbjct 271142 GTCCAAAGTGATCGTCTTACCAGTCAGAGTCTTGACGAAAATTTGCAT 271095 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || |||||||| ||||||| || | || || || || ||||| || || || Sbjct 271550 GCCTCCGCGCAAACGAAGTACCAGGTGGAGCGTAGACTCCTTCTGAATATTGTAGTCAGC 271491 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 |||| || | || || | || || || |||| || | |||||||||||| | || Sbjct 271490 CAAAGTACGACCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGTGG 271431 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTG-TTTA-ATCGTCGCTACTGTGTCTGCGCTTTCC 39669 | |||||| ||||| || ||||| |||| || |||| | | || | | ||| Sbjct 271430 AATGCCTTCCTTGTCCTGGATCTTTTGCTTTACATTGTCG--ATCGAATCCGAGGGCTCC 271373 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||||||| ||||| || ||||| || ||||| ||||| || || |||||| Sbjct 271372 ACGTCCAGCGTAATCGTCTTACCAGTCAAAGTCTTTACAAAAATTTGCATG 271322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347360434327445