Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1526 190 2e-43 seq368 168 7e-37 seq1355 104 2e-17 seq1525 82.4 8e-11 >seq1526 Length=132622 Score = 190 bits (210), Expect = 2e-43 Identities = 620/954 (65%), Gaps = 23/954 (2%) Strand=Plus/Plus Query 132550 TAAAAGTCCGCATCCAAAGTAAAGGTGTCGTCCTTGGCAAACATCACGCCAAATTTTTGA 132609 |||||||| ||||| | ||| || | | || | | |||| || ||| ||||| Sbjct 118344 TAAAAGTCAGCATCAAGAGTGAAAATCTTTTCTTGTG---ACATGACACCAGCCTTTTGG 118400 Query 132610 TATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATA 132669 || || || ||||| || ||||| || ||||| ||||| | ||||||||| | ||| Sbjct 118401 TACTCACCAACCTTCTTTTCAAAGAAGTTAGTCTTTCCTTGCAAGGAAATCAAGTCCATG 118460 Query 132670 AAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGCCTG 132729 ||||| || || ||| || ||||| |||| || |||| | || | || | Sbjct 118461 AAATCGAAAGGATTGTCTACATTGTAAAATTTGGGGCACTGCAGGGCAACCAACAAGCGA 118520 Query 132730 TCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACC 132789 || || || || || ||||| || ||||| ||||||| | || | || | || Sbjct 118521 TCAGCAACAAATTCAATGTACTGGCACATGAGAGCGCAATTCATGCCAATCAAAGCAACG 118580 Query 132790 GGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTA 132849 |||| || || || || || || || || ||| || || || | ||| | | Sbjct 118581 GGCAAGGCCTCCGTCAGGAATTCCTGTTCAATCTTGACAGCTTCCGTAATGATGTGAGTT 118640 Query 132850 ACGCGCGCCGCGCTCGGCCGT---TGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCG 132906 | || | || || || ||| ||| |||| | ||| || ||||| || Sbjct 118641 ATAGTGGCATCAGAAGGACGAGTGTGACGCAAGTGCCTGAATAACAAACAGGCAAAATCA 118700 Query 132907 CAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGG 132966 ||||| | || ||||| | | || ||||| ||| ||| ||||| |||||||| | Sbjct 118701 CAATGAAGACCTTCGTCACGGCTGATTAGTTCATTGGAGAAGGTCAAACCGGGCATCAAC 118760 Query 132967 CCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACG 133026 ||||| || || | ||| || ||||| || || || |||||||||| || || ||| Sbjct 118761 CCGCGCTTCTTCAACCAGAAAATGGCAGCAAATGAACCGGAAAAGAAGATACCTTCCACG 118820 Query 133027 GCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGG-CGATCCAGCGCAG 133085 || || ||||| || ||||| || || || | || |||| | | ||||| |||| Sbjct 118821 GCAGCAAAAGCAACAAGGCGTTCTCCAAAACAG-CTAGTTTGATTTTCAATCCAACGCAT 118879 Query 133086 CGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAG 133145 ||||| || |||| | || || || || || || ||||| || || | ||| Sbjct 118880 AGCCCAGTCTCCCTTCTTGCGAACACAAGGGATGGTGTCAATGGCATTGAAAA---GGAA 118936 Query 133146 TTT---CTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTG 133202 ||| ||| | | | ||| | |||||| || |||||| || |||||||| | ||| Sbjct 118937 TTTACGCTCAACTGGGTCACGAATGTAGGTATCAATGAGGAGAGAGTACATTTCAGCGTG 118996 Query 133203 TACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTC 133262 | ||| || || |||||| || ||||||||||| || || || || || ||||| Sbjct 118997 AATGTTTTCAATCATGATTTGGAACCCGTAAAAGCAACGAGCTTCTGGAACTTGAACTTC 119056 Query 133263 TTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGC 133322 ||| |||||||| |||| ||||| ||||| || || || ||| || || || || Sbjct 119057 TTGTGCGAAACGAGTAACCAAGTTTTCATTGACAATACCATCAGAGGCAGCAAAGAAAGC 119116 Query 133323 C--AGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAA----GCGCTCCCAGTCGCG 133376 | | |||| | | ||| || || | || |||| || ||||| | Sbjct 119117 CAAAACACGAGAAACAAAGAAT--CGTTCATCGTTAGTCAACTTTTCG-TCCCAATGTTT 119173 Query 133377 CGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTA 133436 |||||||||| ||||| || || ||| | ||||| || || || || || || ||||| Sbjct 119174 TATGTCCTTGGAAAGGTCAACTTCTTCGGCAGTCCAGAAGGAAGCTTCAGCCTTCTTGTA 119233 Query 133437 CATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTT 133490 | ||| || || ||| | |||||||| | || || ||| ||| || Sbjct 119234 GAATTGCCAAATATCGTGATACTTGATGGGAAAGAGGACGAAACGGTTGGGATT 119287 >seq368 Length=262043 Score = 168 bits (186), Expect = 7e-37 Identities = 397/593 (67%), Gaps = 10/593 (2%) Strand=Plus/Plus Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCA- 132952 ||| |||||||| |||| |||||||||| | ||| || ||||| ||||| | Sbjct 28286 GCACGCAAAGTCCGTGTGCATACCCTCGTCCCGGCTAATAAGCTCGTT--TGAAAAGCTT 28343 Query 132953 AG-CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAG 133011 || || ||||| | ||||| || ||||||||||| |||| | ||| ||| || || Sbjct 28344 AGACCAGGCATTAAACCGCGCTTCTTGAGCCAAAAGATGGAGCAGAATGAGCCAGAGAAA 28403 Query 133012 AAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCC---GAACGTGGCTTCTTTG 133068 || | ||| || || || || || |||| || || || | | | | | | | | Sbjct 28404 AAAATGCCTTCAACTGCAGCAAAGGCCAAAAGCCGTTCTGGATAGGAAGAGACC-CGTGG 28462 Query 133069 CTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATG 133128 | || ||| ||| ||||| | || |||| ||||||| || || || ||||| Sbjct 28463 ATCGCA--CCACTTCAGAGCCCAGTGCGCTTTTTTGGTGACGCAAGGGATAGTCTCGATA 28520 Query 133129 GCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAA 133188 || | | | || ||||| || | | || ||||| || | ||| Sbjct 28521 GCACGTAGTAGATGGTCCTTCTCAATCGCGTCTTTGATATACGTGTCAATCAAAAGCGAG 28580 Query 133189 TACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCG 133248 |||| ||||||||||| ||||| || ||||||||||| ||||||||||| || ||||| Sbjct 28581 TACACTTCCGAGTGTATATTCTCGATTGCGATTTGAAACCCGTAAAAGCAGCGAGCCTCT 28640 Query 133249 ACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTG 133308 |||||||||||| | ||| | | | |||||||| || ||||||||||| || Sbjct 28641 GGCACCTGCACTTCGTTGCTAAAATTCATGGCTAGATTTTCATTCACGATGCCGTCACTA 28700 Query 133309 GCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCC 133368 || || || || || ||||| ||||| ||||||| ||||||||||| | | || || Sbjct 28701 GCAGCAAAGAAAGCGAGCACATGCTTAATGAAATAACGCTCGTTGTCCGTGAGGCTAGCC 28760 Query 133369 CAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCT 133428 || || | || | ||| || | ||||| | ||||| || || || || ||| Sbjct 28761 CAATCTTTCAGATCGTGCACCAGATCGAGTTCCTCAGCTGTCCAGAAAGAAGCTTCAGCT 28820 Query 133429 TTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCG 133481 || |||||||| ||||| || | || |||||||| | |||||| || Sbjct 28821 TTCTTGTACATCTGCCACACTTCGTGCTCCTGAATGGGAAAGAGCACAAAGCG 28873 >seq1355 Length=184863 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | ||||| || || ||||| | ||||| ||| | || Sbjct 90882 ATGCAGATTTTCGTCAAGACTTTGACGGGAAAGACAATCACTCTTGACGTTGAGCCTTCC 90823 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || | || || | ||||| || |||||||| | ||||| Sbjct 90822 GACTCGATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCACCTGACCA 90764 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || || |||| || ||||| ||| |||| |||| || || || | ||||||||| Sbjct 90763 GCAACGTCTAATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGTACTCTGAGCGACTACAA 90704 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| |||| || || | ||| ||||| || | || ||| Sbjct 90703 CATCCAGAAGGAGTCGACCCTTCACCTTGTGTTGCGTCTGCGTGGAGGC 90655 Score = 104 bits (114), Expect = 2e-17 Identities = 164/231 (71%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || ||||| ||||| ||||| || || ||||| ||||||| ||| | | Sbjct 91341 AATGCAGATTTTTGTAAAGACGCTGACGGGAAAGACAATCACTCTCGACGTAGAGCCATC 91282 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 ||| | | |||| | || | || || | ||||| || |||||||| | |||| Sbjct 91281 TGACTCGATCGATAACG-TGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCACCTGACC 91223 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAA-CGACTAC 38420 | || || || |||| || ||||| ||| |||| |||| || | | | | ||||||| Sbjct 91222 AGCAACGTCTAATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGTAACTTTGAGCGACTAC 91163 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| ||||| |||| || || | ||| ||||| || | || ||| Sbjct 91162 AACATCCAGAAGGAGTCGACCCTTCACCTTGTGTTGCGTCTGCGTGGAGGC 91112 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/230 (70%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | ||||| || || ||||| | ||||| ||| | || Sbjct 91111 ATGCAGATTTTCGTCAAGACTTTGACGGGAAAGACAATCACTCTTGACGTTGAGCCTTCC 91052 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || | || || | ||||| || |||||||| | ||||| Sbjct 91051 GACTCGATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCACCTGACCA 90993 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || || |||| || ||||| ||| |||| |||| || || | | ||||||||| Sbjct 90992 GCAACGTCTAATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGTACTTTGAGCGACTACAA 90933 Query 38423 CATCCA-AAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| |||||| |||| || || | ||| ||||| || | || ||| Sbjct 90932 CATCCAGAAAGGAGTCGACCCTTCACCTTGTGTTGCGTCTGCGTGGAGGC 90883 Score = 82.4 bits (90), Expect = 8e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 38324 AGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 |||| |||| ||||| || |||||||| | ||||| || || || |||| || || Sbjct 90574 AGAAGAAATTTAGGACAAGGAAGGAATTCCACCTGACCAGCAACGTCTAATTTTTGCTGG 90515 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443 ||| ||| |||| |||| || || || | ||||||||||||||| || || |||| || Sbjct 90514 CAAGCAGTTGGAGGACGGCCGTACTCTGAGCGACTACAACATCCAGAAAGAGTCGACTCT 90455 Query 38444 GCATTTGGTGCTGCG 38458 || | ||| |||| Sbjct 90454 TCACCTTGTGTTGCG 90440 >seq1525 Length=339361 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 ||||||||| | || ||||| || | |||| || || || || || || |||| || Sbjct 204934 GGAATTCCCCCGGATCAACAACGTTTGATTTTTGCTGGTAAGCAACTTGAAGACGGACGT 204875 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 ||||| |||||||||||||||||||||| | || || || ||||| || || ||| | Sbjct 204874 ACCCTTTCCGACTACAACATCCAAAAGGAATCAACTCTTCACTTGGTTCTTCGCTTGCGT 204815 Query 38466 GGCGG 38470 || || Sbjct 204814 GGTGG 204810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500159264073600