Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq590 131 7e-25 seq100 122 3e-22 seq1445 107 8e-18 seq1110 102 3e-16 seq763 102 3e-16 seq1422 98.7 4e-15 seq811 95.1 5e-14 seq1355 91.5 6e-13 >seq590 Length=245030 Score = 131 bits (144), Expect = 7e-25 Identities = 252/371 (68%), Gaps = 13/371 (4%) Strand=Plus/Plus Query 451238 TTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAA 451297 |||||||||||| ||||||| | |||||| | | ||| ||||| |||| || || Sbjct 143716 TTTGCTCCTGAACAAATTTCTGCCATGGTTTTGAGTAAGATGAAGGAAATTGCTGAGGCT 143775 Query 451298 TATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCA 451357 | | ||| | ||| | | || || | ||||| || ||||| ||||||||||| Sbjct 143776 GCTTTGGGTCGTAAAGTGAACAAGGCTGTCGTGACTGTCCCTGCTTACTTCAATGATGCT 143835 Query 451358 CAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATT 451417 ||||| ||||| || || ||||| || ||||||| ||| | ||| |||| | | Sbjct 143836 CAACGTCAAGCTACCAAGGATGCTGGTGTTATTGCTAATTTGGAAGTTGTTCGTGTCCTC 143895 Query 451418 AATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaa 451477 |||||||| || || |||||| | || || || || | | | | | |||| Sbjct 143896 AATGAACCGACTGCTGCTGCTATCGCTTACGGTCTTG---------ACGTTTCGGGAGAA 143946 Query 451478 aaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGA--TACTTCTGTACTTTCAA 451535 || || ||| | || ||||| || ||||| || ||| || | ||||| | | Sbjct 143947 AAGAACATTGTCGTTTTTGACTTGGGTGGTGGTACTTTCGATGTCAGTCTGT--TGACCT 144004 Query 451536 TTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAG 451595 ||||| |||| | |||||||| ||||| || |||||||||||| | || ||| ||| Sbjct 144005 TTGAAAATGGTTTGTTTGAAGTTAAGGCTGTCAGTGGTGATACTCACTTGGGTGGTCAAG 144064 Query 451596 ATATTGATAAT 451606 | |||||||| Sbjct 144065 ACTTTGATAAT 144075 >seq100 Length=112360 Score = 122 bits (134), Expect = 3e-22 Identities = 197/285 (69%), Gaps = 9/285 (3%) Strand=Plus/Minus Query 451328 ATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACAT 451387 || || || || || || || |||||| | ||| | | ||||| ||||||| ||| Sbjct 6160 ATAACAGTACCAGCATACTTTAATGATTCGCAAAGACTCGCAACCCAAGATGCTGGAAGA 6101 Query 451388 ATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATAT 451447 ||||| ||| | | ||||| |||||| | ||||||||||| ||||| || |||| ||| Sbjct 6100 ATTGCAGGTCTTGAAGTTCTACGAATTTTAAATGAACCTACCGCAGCGGCCTTAGCTTAT 6041 Query 451448 GGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGA 451507 || ||| || ||| ||| || ||| |||||| | ||||| || || ||| Sbjct 6040 GGGTTAG---------AAAAAAGAGATGACGAAATTATTTTTATTTTTGACTTAGGAGGA 5990 Query 451508 GGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACC 451567 || || |||| ||||||| | ||| |||| ||||||||||| || || Sbjct 5989 GGGACATTTGATGTTTCTGTATTAGAGGTTGGAGATACTGTATTTGAAGTGTTAGCTACT 5930 Query 451568 AATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCAATT 451612 ||| ||||| ||| ||||||| || ||| | ||| | |||||| Sbjct 5929 TCTGGAGATACACATTTAGGAGGAGATGATTTCGATCAAGCAATT 5885 Score = 122 bits (134), Expect = 3e-22 Identities = 197/285 (69%), Gaps = 9/285 (3%) Strand=Plus/Plus Query 451328 ATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACAT 451387 || || || || || || || |||||| | ||| | | ||||| ||||||| ||| Sbjct 13020 ATAACAGTACCAGCATACTTTAATGATTCGCAAAGACTCGCAACCCAAGATGCTGGAAGA 13079 Query 451388 ATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATAT 451447 ||||| ||| | | ||||| |||||| | ||||||||||| ||||| || |||| ||| Sbjct 13080 ATTGCAGGTCTTGAAGTTCTACGAATTTTAAATGAACCTACCGCAGCGGCCTTAGCTTAT 13139 Query 451448 GGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGA 451507 || ||| || ||| ||| || ||| |||||| | ||||| || || ||| Sbjct 13140 GGGTTAG---------AAAAAAGAGATGACGAAATTATTTTTATTTTTGACTTAGGAGGA 13190 Query 451508 GGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACC 451567 || || |||| ||||||| | ||| |||| ||||||||||| || || Sbjct 13191 GGGACATTTGATGTTTCTGTATTAGAGGTTGGAGATACTGTATTTGAAGTGTTAGCTACT 13250 Query 451568 AATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCAATT 451612 ||| ||||| ||| ||||||| || ||| | ||| | |||||| Sbjct 13251 TCTGGAGATACACATTTAGGAGGAGATGATTTCGATCAAGCAATT 13295 >seq1445 Length=178852 Score = 107 bits (118), Expect = 8e-18 Identities = 248/374 (66%), Gaps = 0/374 (0%) Strand=Plus/Plus Query 364659 GCTCAATTAGCAGGTTTTGTATCTGACCGGGTAGCTTATCATCACGGTGAGGCAAGTTTA 364718 ||||||||||| |||| || | || | |||||||||||||||||| ||| || Sbjct 44453 GCTCAATTAGCCGGTTACGTTGCAGAACACTCTGCTTATCATCACGGTGAGCAAAGCTTG 44512 Query 364719 ATGGGAGCAATAATTGGAATGGCACAAAATTTTGTTGGAAGTAATAATGTAAATTTACTA 364778 | || ||||| |||| ||||| ||||||||||| ||||| | || ||||| Sbjct 44513 TGTTCCACCATTATTGGCTTGGCTCAAAACTTTGTTGGAAGCAATAACATTAACTTACTT 44572 Query 364779 GAACCAAAAGGACAATTTGGAAGTCGAGTAATGGGAGGTAAAGATTCTGCCAGCCCACGT 364838 ||||| || || |||||||| | ||| | || ||||||||| |||| || ||| Sbjct 44573 GAACCGAACGGTCAATTTGGTACTCGTTTGCAAGGTGGTAAAGATGCTGCTTCACCTCGT 44632 Query 364839 TATATTTGGACCAAACTTGAAAAAGTGGCAGGATTAATATTTAGAAAAGAAGATAATCCA 364898 || |||| || || || | || | | || || | |||||| || | Sbjct 44633 TACATTTTCACTCTGCTCAGCAACCTTTCACGCCTCATTTTCCGTCCCGAAGATGATGCC 44692 Query 364899 ATTTTAAATTATATTAATGATGATGGATTAATGGTTGAACCTGAATTTTATCTTCCTATT 364958 | || || || | || ||||| || || ||||||| |||| || ||||||| Sbjct 44693 CTCTTGAAGTACTTGAACGATGACGGGCAAAGTATTGAACCGGAATGGTACACTCCTATT 44752 Query 364959 ATTCCTATGATTTTAGTAAATGGAGCAACAGGCATTGGTACTGGTTTCTCCACCTCAATC 365018 | || ||| | || || ||||| | ||| || |||||||||| || || || || Sbjct 44753 CTGCCCATGGTCTTGGTCAATGGTGGTGAAGGTATCGGTACTGGTTGGTCTACTTCCATT 44812 Query 365019 CCTTGTTACCATCC 365032 ||| |||| |||| Sbjct 44813 CCTAATTACAATCC 44826 >seq1110 Length=486086 Score = 102 bits (112), Expect = 3e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || || |||| || || || ||||| || || || ||| | || Sbjct 256103 ATGCAGATTTTTGTCAAGACGTTGACGGGCAAGACCATTACGCTGGACGTGGAACCGTCA 256162 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | || || ||||| || || |||||||| ||||| ||||| || Sbjct 256163 GACAGCATTGACAATGTAAAGCAGAAAATCCAGGACAAGGAAGGCATTCCGCCTGACCAG 256222 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||||| || || | || || |||||||||||||| | | | ||||| || || Sbjct 256223 CAGCGTTTGATCTTTGCTGGCAAGCAACTTGAAGATGGCCGTTCACTTGCGGACTACAAC 256282 Query 391230 ATTGATAAGGATGC 391243 ||| | |||| ||| Sbjct 256283 ATTCAAAAGGGTGC 256296 >seq763 Length=1375 Score = 102 bits (112), Expect = 3e-16 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 451274 AAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACT 451333 ||||||||| | || || ||| | || | ||| ||| ||||| || || |||||| Sbjct 42 AAAATGAAAAAGACTGCGGAAGACTACTTAGGTGAAGAAGTCACTGAAGCCGTCATTACT 101 Query 451334 GTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCT 451393 || || ||||| || || || ||||| ||||| |||||||||||||| | ||| ||| Sbjct 102 GTACCAGCTTACTTTAACGACAGCCAACGTCAAGCCACTAAAGATGCAGGCCGTATCGCT 161 Query 451394 GGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449 |||||| | || || || ||||| ||||| || || ||||| || || | ||| Sbjct 162 GGTTTAGAAGTGAAACGTATCATTAACGAACCAACCGCTGCTGCGCTTGCTTTTGG 217 >seq1422 Length=277306 Score = 98.7 bits (108), Expect = 4e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | |||||||| || || ||||||||||| || || ||| | || || ||| | || Sbjct 271094 AATGCAAATTTTCGTCAAGACTCTGACTGGTAAGACGATCACTTTGGACGTGGAACCTTC 271153 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || || || | || ||||| || || || |||||||||||||| |||||||| Sbjct 271154 GGACTCGATCGATAACGTAAAGCAAAAGATCCAGGACAAGGAAGGAATTCCACCTGATCA 271213 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || ||| | || || | || || || || || || || | |||||||| || || || Sbjct 271214 GCAGCGTCTGATATTTGCCGGCAAGCAGCTCGAGGACGGTCGTACTTTGGCTGACTACAA 271273 Query 391229 TATTGATAAGGA 391240 ||| | ||||| Sbjct 271274 TATACAGAAGGA 271285 >seq811 Length=1194 Score = 95.1 bits (104), Expect = 5e-14 Identities = 182/265 (69%), Gaps = 5/265 (2%) Strand=Plus/Minus Query 496953 TTTCCTATTAAATATCATAAAATCTGGGATTTATATaaaaaaaTGGAAGCAGCTTTTTGG 497012 |||||||| ||| ||||| | || ||||| | ||||||||||||||||| ||| ||| Sbjct 391 TTTCCTATCAAACATCATGATATTTGGGAATGGTATAAAAAAATGGAAGCTAGTTTCTGG 332 Query 497013 ACAGCTGAAGAAATAGATTGGTCTAAAGA-TAAACATGATT---TTAAAAAATTAAATCA 497068 || ||||||||||| |||| | |||| | ||| |||| ||| ||| | ||| | Sbjct 331 ACTGCTGAAGAAATCGATTTGCACCAAGATTTGACA-GATTGGAATAACAAACTGAATGA 273 Query 497069 AGATGAACAACGATTTATTAAATATGTATTAGCAtttttttCGGCAAGTGATACAATTGT 497128 |||||| | || |||||| || | |||||||| ||| | || ||| ||| || Sbjct 272 CGATGAAAGATATTTCATTAAACATATTTTAGCATTCTTTGCAGCTTCTGACGGAATCGT 213 Query 497129 AAATATTAATTTAGGAGAAAGATTATCTCATGAAGTTCAACCACTTGAAGCCAAAATTGC 497188 |||| || || | || | || | ||||||||| |||||| || || Sbjct 212 AAATGAAAACTTGGCTGAGAACTTTGTAAACGAAGTTCAATATGCTGAAGCGAAGTTTTT 153 Query 497189 TTATACTTTTCAAATGATGATGGAA 497213 ||| ||| || || ||||||||| Sbjct 152 CTATGGTTTCCAGATTATGATGGAA 128 >seq1355 Length=184863 Score = 91.5 bits (100), Expect = 6e-13 Identities = 159/230 (69%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 391046 TATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATC 391105 || |||| | ||||| || || || ||||| || || || || ||||| || || || | Sbjct 91344 TACAATGCAGATTTTTGTAAAGACGCTGACGGGAAAGACAATCACTCTCGACGTAGAGCC 91285 Query 391106 ATCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGA 391165 |||||| || || | || || || ||||| || |||||||||||||| ||||| Sbjct 91284 ATCTGACTCGATCGATAACGTGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCACCTGA 91225 Query 391166 TCAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAG-AACTTTGGCGGATT 391224 || |||||| ||||||| | || || || | || || || | ||||||| || | Sbjct 91224 CCAGCAACGTCTAATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGTAACTTTGAGCGACT 91165 Query 391225 ATAATATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 | || || | ||||| | || |||||| | || || | ||| | ||| Sbjct 91164 ACAACATCCAGAAGGAGTCGACCCTTCACCTTGTGTTGCGTCTGCGTGGA 91115 Score = 86.0 bits (94), Expect = 2e-11 Identities = 154/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || |||| || || || || |||||||| ||||| | || Sbjct 90882 ATGCAGATTTTCGTCAAGACTTTGACGGGAAAGACAATCACTCTTGACGTTGAGCCTTCC 90823 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || || || | || || || ||||| || |||||||||||||| ||||| || Sbjct 90822 GACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCACCTGACCAG 90763 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||| ||||||| | || || || | || || || | ||| || || || || Sbjct 90762 CAACGTCTAATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGTACTCTGAGCGACTACAAC 90703 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 || | ||||| | || |||||| | || || | ||| | ||| Sbjct 90702 ATCCAGAAGGAGTCGACCCTTCACCTTGTGTTGCGTCTGCGTGGA 90658 Score = 84.2 bits (92), Expect = 9e-11 Identities = 155/226 (69%), Gaps = 1/226 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || |||| || || || || |||||||| ||||| | || Sbjct 91111 ATGCAGATTTTCGTCAAGACTTTGACGGGAAAGACAATCACTCTTGACGTTGAGCCTTCC 91052 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || || || | || || || ||||| || |||||||||||||| ||||| || Sbjct 91051 GACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCACCTGACCAG 90992 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||| ||||||| | || || || | || || || | |||||| || || || Sbjct 90991 CAACGTCTAATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGTACTTTGAGCGACTACAAC 90932 Query 391230 ATTGA-TAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 || | ||||| | || |||||| | || || | ||| | ||| Sbjct 90931 ATCCAGAAAGGAGTCGACCCTTCACCTTGTGTTGCGTCTGCGTGGA 90886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975663595423820