Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1166 324 1e-82 seq763 114 1e-19 seq100 114 1e-19 seq1434 105 5e-17 seq1848 95.1 9e-14 seq1890 89.7 4e-12 seq1461 89.7 4e-12 >seq1166 Length=243427 Score = 324 bits (358), Expect = 1e-82 Identities = 968/1473 (66%), Gaps = 48/1473 (3%) Strand=Plus/Minus Query 517265 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 517324 || || | ||||||||| |||| | || || ||||||||||||||||| || || | Sbjct 177042 ACCTTCAAAATACCATTTTCATCAACGTCGAAAGTGACTTCAATTTGAGGAACACCGCGA 176983 Query 517325 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 517384 |||| || || || || | | ||| | || || || ||||| || || || Sbjct 176982 GGAGCCGGGGGAATTCCAGAAAGCTCGAATTTACCGAGCAAGTTGTTATCCTTGGTCAAA 176923 Query 517385 TTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTA 517444 | |||||||| || |||| ||| || || ||| ||| ||||| | ||||| | Sbjct 176922 GTACGTTCACCTTCAAAAACTTGAATCAAGACACCAGGTTGGTTATCAGCGTAAGTAGAG 176863 Query 517445 AATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATA 517504 || | | || ||| ||||| || || || | ||| | | ||||| | | Sbjct 176862 AAGATTTGAGAACGCTTAGTGGGAATGGTAGTATTACGGGGAATCAAAGCAGTCATGACA 176803 Query 517505 CCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGA 517564 ||||| || ||||| | ||| | ||| | |||| || || | || | | || || | Sbjct 176802 CCACCAGCAGTTTCAATACCCAAAGACAAGGGAGCAACGTCCAAGAGCAACAAATCTTCA 176743 Query 517565 AGTTTTTCATCAGTTTG-ACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAAC 517623 || || | | | |||| ||| || || ||||||| |||||||| || ||||| Sbjct 176742 -GTCTTCTTGCTGCTGACACCAGAAAGGATGGCAGCTTGAACGGCAGCACCGTAAGCAAC 176684 Query 517624 AGCTTCATCAGGATTAACAG--TTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGA 517681 ||| |||||||| || | || || || ||| || || ||||| || | | || Sbjct 176683 AGCCTCATCAGGGTTGATAGACTTGCAGG--GTTCCTTTCCGTTGAAGAAGTCAGTAATC 176626 Query 517682 AGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGT 517741 | | | ||||| |||||||||| || || || || || |||||||| | |||| | Sbjct 176625 AACTTTTGAACCTTGGGAATACGAGTGGAACCACCGACCAAGACAATTTCGTCAACCT-T 176567 Query 517742 GAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAA 517800 | | ||||| | || ||||| || || ||||||||||| |||| || | || Sbjct 176566 GCTCTTATCAATCTTGGAATCACGCAAGACCTTTTCAACGGGGTCAATGGTGGCACGGAA 176507 Query 517801 CAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAG---AGTGACATTATAATCAAT 517857 |||||| ||||||||||| || ||| | || || |||| | | | || || Sbjct 176506 CAAGTCCATGCAAAGTTCTTCAAAGCGAGCACGAGAAATGGAAGTG---TAAAAGTCCAT 176450 Query 517858 TCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTT 517917 || |||||||| ||||| | ||||| | || |||||| | |||||| | | ||| || Sbjct 176449 ACCATCGAACAAGGAATCGATTTCAACGGAAGCTTGAGTAGCAGAAGACAAGGTACGCTT 176390 Query 517918 AGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAATCTGT 517977 ||| ||||| || || || | || | || | || || |||| | ||| | Sbjct 176389 AGCGCGTTCGCAAGCAGTGCGAAGACGACGAAGAGCACGAGC--ATTGCTGGTAATGTCC 176332 Query 517978 TTTATATTTT--CTCTTGAAATCTTCAACACACCATGTTA--CAAGACGATTATCAAAAT 518033 || | || | | |||||| ||||||||| | |||| |||| || ||||| |||| Sbjct 176331 TTCTTGTTCTTGCGCTTGAATTCTTCAACAAAGTG-GTTAACCAAG-CGGTTATCGAAAT 176274 Query 518034 CTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAA 518093 ||||||| ||||| | ||||| || | ||||| | |||| ||||| || |||||| Sbjct 176273 CTTCACCACCCAAGTGAGTATCACCAGCAGTAGCCTTGACTTCGAAAACACCTCCTTCAA 176214 Query 518094 GAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTT 518153 || ||| | | ||||| || |||||||||| ||| || || || ||||| || Sbjct 176213 TAGCCAACAAGCTGACATCGAAAGTACCACCACCCAAATCGAAGATGAGGACATTGCGTT 176154 Query 518154 CTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 518213 | | | | ||||| | || || |||| ||||||||||| ||||| ||||| | Sbjct 176153 CGTCAGTACAGCTCTTATCCAATCCGTAAGCAATGGCAGCAGCAGTGGGTTCGTTAATGA 176094 Query 518214 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAAT 518273 | | | ||| || | ||| ||||| ||| ||||| || || ||||| | ||| || | Sbjct 176093 TGCGGAGAACGTTCAAACCGGCAATGGCTCCAGCATCCTTGGTAGCTTGACGTTGAGAGT 176034 Query 518274 CGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTT-TACCAATATAAGCG 518332 | || || || ||||| || || | ||||||| | ||||||| ||| | |||| Sbjct 176033 CATTGAAGTAGGCAGGGACGGTGACGACGGCATTCTTGACTTCTTCGTTCAAGA-AAGCT 175975 Query 518333 CTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTG--GGGAA---- 518386 || ||||| ||||| || || | ||| || || |||| ||| | | ||| Sbjct 175974 TCAGCAGTTTGCTTCATCTTCAACAAGACCATGGAAGAGATTTCTTCAGGAGTGAACACT 175915 Query 518387 TATTG------CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACA 518440 | ||| |||| ||||| ||||| |||| | | |||| | || Sbjct 175914 TTTTGCTCACCCTTGAATTCAATTTGA-ATGA-----CGGGCT-TGGTGTCTT-----GG 175867 Query 518441 TTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCT 518500 | ||| || || || ||||||| ||||| || ||| || | ||| | ||| Sbjct 175866 TCAATGACCTTGAAGGGCCAGTGCTTCATGTCGTCTTGGACTTCCTTGTCGGTGAAACGA 175807 Query 518501 CTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATAT 518560 | |||||| || || || ||||| || | ||| ||| || || || || |||| | Sbjct 175806 CGACCAATCAAACGCTTAGCATCGAAGACAGTGTTGAAGGGGTTCATGGCGACTTGGTTC 175747 Query 518561 TTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTG 518620 || || ||||| ||||| | | || || || || || | ||||| || ||||| ||| Sbjct 175746 TTAGCAGCATCACCAATTAAGCGCTCAGTTTCAGTGAAGGCGACATAAGAGGGAGTAGTG 175687 Query 518621 CGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAA 518680 || |||||||| || || ||||| |||||||| | |||| ||| ||| || ||| Sbjct 175686 CGGTTACCTTGGTCGTTAGCAATGATTTCAACACGATCATTAGTCCAGTAACCAACGCAA 175627 Query 518681 CTAAAAGTTGTTCCTAAATCAATACCAATAGCA 518713 |||| || || ||||||||||||| |||| Sbjct 175626 GAGTAAGTAGTACCCAAATCAATACCAACAGCA 175594 >seq763 Length=1375 Score = 114 bits (126), Expect = 1e-19 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 518167 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 518226 |||||| | |||| | |||| |||||||| |||||||| ||||| || | || | Sbjct 227 TTTATCCATACCAAAAGCAAGCGCAGCAGCGGTTGGTTCGTTAATGATACGTTTCACTTC 168 Query 518227 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 518286 | |||||| || | |||||||||||||||||||| | ||| |||||||| || || Sbjct 167 TAAACCAGCGATACGGCCTGCATCTTTAGTGGCTTGACGTTGGCTGTCGTTAAAGTAAGC 108 Query 518287 AGGAACAGTAATAACGGCATCAGTTACTTCTTTACC 518322 || |||||||| ||||| ||||| ||||||| ||| Sbjct 107 TGGTACAGTAATGACGGCTTCAGTGACTTCTTCACC 72 >seq100 Length=112360 Score = 114 bits (126), Expect = 1e-19 Identities = 191/275 (69%), Gaps = 6/275 (2%) Strand=Plus/Plus Query 518026 ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC 518085 ||| ||||| || ||||| || | |||| ||| || |||||| |||| || | Sbjct 5894 ATCGAAATCATCTCCTCCTAAATGTGTATCTCCAGAAGTAGCTAACACTTCAAATACAGT 5953 Query 518086 ATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTAC 518145 |||| ||| || | || |||||| || || || || | |||||||||| | Sbjct 5954 ATCTCCAACCTCTAATACAGAAACATCAAATGTCCCTCCTCCTAAGTCAAAAATAAAAAT 6013 Query 518146 ATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTC 518205 | ||||| | ||| |||| || | ||||| || || || || || || ||||| Sbjct 6014 A---ATTTCGTCATCTC---TTTTTTCTAACCCATAAGCTAAGGCCGCTGCGGTAGGTTC 6067 Query 518206 ATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCT 518265 ||| | ||||| | ||| | |||||| ||||||||||| ||||||| || || |||| Sbjct 6068 ATTTAAAATTCGTAGAACTTCAAGACCTGCAATTCTTCCAGCATCTTGGGTTGCGAGTCT 6127 Query 518266 TTGTGAATCGTTAAAATATGCAGGAACAGTAATAA 518300 ||| ||||| ||||| ||||| || || || |||| Sbjct 6128 TTGCGAATCATTAAAGTATGCTGGTACTGTTATAA 6162 Score = 114 bits (126), Expect = 1e-19 Identities = 191/275 (69%), Gaps = 6/275 (2%) Strand=Plus/Minus Query 518026 ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC 518085 ||| ||||| || ||||| || | |||| ||| || |||||| |||| || | Sbjct 13286 ATCGAAATCATCTCCTCCTAAATGTGTATCTCCAGAAGTAGCTAACACTTCAAATACAGT 13227 Query 518086 ATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTAC 518145 |||| ||| || | || |||||| || || || || | |||||||||| | Sbjct 13226 ATCTCCAACCTCTAATACAGAAACATCAAATGTCCCTCCTCCTAAGTCAAAAATAAAAAT 13167 Query 518146 ATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTC 518205 | ||||| | ||| |||| || | ||||| || || || || || || ||||| Sbjct 13166 A---ATTTCGTCATCTC---TTTTTTCTAACCCATAAGCTAAGGCCGCTGCGGTAGGTTC 13113 Query 518206 ATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCT 518265 ||| | ||||| | ||| | |||||| ||||||||||| ||||||| || || |||| Sbjct 13112 ATTTAAAATTCGTAGAACTTCAAGACCTGCAATTCTTCCAGCATCTTGGGTTGCGAGTCT 13053 Query 518266 TTGTGAATCGTTAAAATATGCAGGAACAGTAATAA 518300 ||| ||||| ||||| ||||| || || || |||| Sbjct 13052 TTGCGAATCATTAAAGTATGCTGGTACTGTTATAA 13018 Score = 93.3 bits (102), Expect = 3e-13 Identities = 206/311 (66%), Gaps = 15/311 (5%) Strand=Plus/Plus Query 322085 TCAAAATCTTCTCCTCCCAAATGTGTATTACCACCTACTGCTAATGTTCTAAATACTCCA 322144 || ||||| |||||||| |||||||||| ||| ||||| | |||||| | Sbjct 5895 TCGAAATCATCTCCTCCTAAATGTGTATCTCCAGAAGTAGCTAACACTTCAAATACAGTA 5954 Query 322145 TTTGAGATATTCATTAACGAAACATCTAAAGTCCCAGCTCCTAAGTCATAAACAATTACG 322204 | | | | | || |||||||| || ||||| ||||||||||| ||| || | Sbjct 5955 TCTCCAACCTCTAATACAGAAACATCAAATGTCCCTCCTCCTAAGTCAAAAATAAAAAT- 6013 Query 322205 TTACCACCAGtttttttATTCCATTTTTCACTTCCTAAACCGTATGCAAGAGCTGCTGCA 322264 | ||| | || | |||||| ||| || || || | || ||||| Sbjct 6014 --------AATTTCGTCATCTCTTTTTTC------TAACCCATAAGCTAAGGCCGCTGCG 6059 Query 322265 GTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCAATTTTAGCAGAATCAAGAGTT 322324 || |||||||| | ||| ||||| || | ||| |||||| | ||| ||| | ||| Sbjct 6060 GTAGGTTCATTTAAAATTCGTAGAACTTCAAGACCTGCAATTCTTCCAGCATCTTGGGTT 6119 Query 322325 GCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTAATAACTGCTTTATTAATAGGT 322384 || |||| || | |||||||| ||||||||||| || |||| ||||| | || ||| Sbjct 6120 GCGAGTCTTTGCGAATCATTAAAGTATGCTGGTACTGTTATAATCGCTTTCGTGATTGGT 6179 Query 322385 TTTTGTAAATA 322395 | | |||||| Sbjct 6180 ATATTTAAATA 6190 Score = 93.3 bits (102), Expect = 3e-13 Identities = 206/311 (66%), Gaps = 15/311 (5%) Strand=Plus/Minus Query 322085 TCAAAATCTTCTCCTCCCAAATGTGTATTACCACCTACTGCTAATGTTCTAAATACTCCA 322144 || ||||| |||||||| |||||||||| ||| ||||| | |||||| | Sbjct 13285 TCGAAATCATCTCCTCCTAAATGTGTATCTCCAGAAGTAGCTAACACTTCAAATACAGTA 13226 Query 322145 TTTGAGATATTCATTAACGAAACATCTAAAGTCCCAGCTCCTAAGTCATAAACAATTACG 322204 | | | | | || |||||||| || ||||| ||||||||||| ||| || | Sbjct 13225 TCTCCAACCTCTAATACAGAAACATCAAATGTCCCTCCTCCTAAGTCAAAAATAAAAAT- 13167 Query 322205 TTACCACCAGtttttttATTCCATTTTTCACTTCCTAAACCGTATGCAAGAGCTGCTGCA 322264 | ||| | || | |||||| ||| || || || | || ||||| Sbjct 13166 --------AATTTCGTCATCTCTTTTTTC------TAACCCATAAGCTAAGGCCGCTGCG 13121 Query 322265 GTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCAATTTTAGCAGAATCAAGAGTT 322324 || |||||||| | ||| ||||| || | ||| |||||| | ||| ||| | ||| Sbjct 13120 GTAGGTTCATTTAAAATTCGTAGAACTTCAAGACCTGCAATTCTTCCAGCATCTTGGGTT 13061 Query 322325 GCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTAATAACTGCTTTATTAATAGGT 322384 || |||| || | |||||||| ||||||||||| || |||| ||||| | || ||| Sbjct 13060 GCGAGTCTTTGCGAATCATTAAAGTATGCTGGTACTGTTATAATCGCTTTCGTGATTGGT 13001 Query 322385 TTTTGTAAATA 322395 | | |||||| Sbjct 13000 ATATTTAAATA 12990 >seq1434 Length=254872 Score = 105 bits (116), Expect = 5e-17 Identities = 104/132 (79%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 668849 TTAAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCT 668908 |||| || ||||| ||||| | || || |||||||||||||| ||||| ||| | || Sbjct 154957 TTAAAGGGAAAAGAGGGTCGATTAAGGGGCAATTTGATGGGAAAGCGTGTTGATTTCTCG 155016 Query 668909 GCACGTACAGTTATTACTTCTGATCCCAATAT-TGCTCTCAATGAAGTTGGTGTTCCTCT 668967 || ||||| |||||||| ||||||| ||| | ||| | |||||||||||||||||| Sbjct 155017 GCTCGTACGGTTATTACGCCTGATCCTAATTTGAGCT-TGGATGAAGTTGGTGTTCCTCG 155075 Query 668968 TATTATTGCTAA 668979 || |||||| || Sbjct 155076 TAGTATTGCCAA 155087 >seq1848 Length=203765 Score = 95.1 bits (104), Expect = 9e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 668855 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCTGCACGT 668914 ||||| |||||||| ||| | || ||||||||||| |||||||| ||| | || |||||| Sbjct 89851 GGTAAGGAAGGTCGCATTCGTGGTAATTTGATGGGCAAACGTGTAGATTTTTCAGCACGT 89792 Query 668915 ACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCCTCTTATTATT 668974 || |||||||| | || ||||| |||| | || ||||||| || |||| || Sbjct 89791 ACGGTTATTACCGCCGACCCCAACCTTGCCATTGATCAAGTTGGCGTCCCTCGGTCAATA 89732 Query 668975 GCTAAAAATCTTACT 668989 || | ||||||||| Sbjct 89731 GCGATGAATCTTACT 89717 >seq1890 Length=541308 Score = 89.7 bits (98), Expect = 4e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227 ||||| | |||| | || ||||| ||||| || ||||||||||| | | | || | Sbjct 523628 TTATCCAAACCAAAAGCCAAAGCTGCAGCCGTGGGTTCATTAATGACACGAAGGACTTCC 523687 Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287 | || |||||| | || ||||| || || ||||| | ||| ||||||||||| || ||| Sbjct 523688 AAGCCGGCAATTGTACCAGCATCCTTGGTCGCTTGACGTTGAGAATCGTTAAAGTAAGCA 523747 Query 518288 GGAACAGTAATAACGGC 518304 || ||||| || ||||| Sbjct 523748 GGGACAGTGATGACGGC 523764 >seq1461 Length=83208 Score = 89.7 bits (98), Expect = 4e-12 Identities = 126/175 (72%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 870792 AGAAAATTATTGTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATT 870851 ||| |||| | | |||| ||| |||||||||| ||| || || ||||| | || || | Sbjct 79542 AGACAATTGTCATTGATTTTTCGTCTCCAAATACTGCCAAGGACATGCACGTAGGTCACT 79483 Query 870852 TAAGATCAACTATTATTGGTGAATCTATTTGTAGGGTA--TTAGAAATGTGTGGACACGA 870909 | |||| || ||||||||||| | | ||| | ||| || ||| | || ||||| Sbjct 79482 TGCGATCCACGATTATTGGTGATACAA--TGTCGCGTATCTTTGAATTTCAGGGTCACGA 79425 Query 870910 TGTTTATCGTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATT 870964 ||| | ||||| |||||| | || || ||||| ||||| || || ||||| ||| Sbjct 79424 TGTGAAGCGTATCAATCATATCGGCGACTGGGGTACTCAGTTTGGAATGTTGATT 79370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780714965568490