Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1301 286 4e-72 seq1033 114 2e-20 seq412 89.7 6e-13 >seq1301 Length=515170 Score = 286 bits (316), Expect = 4e-72 Identities = 1126/1748 (64%), Gaps = 51/1748 (3%) Strand=Plus/Plus Query 109414 TAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTTG 109473 ||||||||||| || || | |||| |||||| |||| | ||||||||||| | || Sbjct 331495 TAATACATACCAGTCTTCAAACCAAGCTTCCAACCGTAAAAATGCATTGAAGTCAACTTC 331554 Query 109474 GAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACT--GATCGATGAATCGAC 109531 |||| || || | || | ||||| ||| |||| |||| ||||| || Sbjct 331555 GAAAAGGTTGGTTCGGCAATGTGAATGTTCAA--ACTTTGACTTTGATCAATGAAAGCAC 331612 Query 109532 CACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTACA 109591 |||||||||| |||| ||| || || ||||| ||||||||| || |||||||||| Sbjct 331613 CACGATCAGCAGCCAAGTCAATAATGACTTTTTGAGAAATTTCCCAAACTGTCTTGTACA 331672 Query 109592 AATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTTCACCA 109651 | | ||| | || | || ||| || ||||| | || ||||| || | | Sbjct 331673 AGTCCTTCAATTCTTGCGGGATGCTGGGAATCTTTTGTACTGAACCACCCGCAGCAATGA 331732 Query 109652 TGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGT-CAACAAGATGC 109710 || ||| |||||| || ||| | || | | | | ||| | || |||| | Sbjct 331733 TGCGATTCTTCATGGATTCATTCCACAATCCCAATTCAGTCAAATCCTTCATCAAG-TAT 331791 Query 109711 TTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAG 109770 | ||||| | ||||||||||| | || || ||| ||||| | ||| | Sbjct 331792 TGATTGACAATTTGGAATTCACCAGCTAAAACACGACGAGTGTAAATGTTGGAAGTGAAA 331851 Query 109771 GGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCC 109830 || || || || ||||||| || || ||||| | || ||||| || ||||||||||| Sbjct 331852 GGCTCAAAGCATTCATTGTAACCAAGAATTTGAGAGGTAGAAGCAGTCGGCATGGGAGCA 331911 Query 109831 A-TGAGAAGACTGTTTCGGAGACCCT--TCG----TCTTTACCCGCTCACGCATTGCGTC 109883 | | | ||| || || | ||| | || |||| || | | || Sbjct 331912 AGTAACAAGGAA-TTACGAACACCATGTTCAGAAATCTTAGCCTTCAAA------GCTGA 331964 Query 109884 CCAATCATAACGACCACTAAATTTA--GTCTCACCATCCCACATATCTGGTTGAAGTACA 109941 |||||| |||| | | | |||| || |||||| || ||| | ||| Sbjct 331965 CCAATC-------CCACAAGTCGGAAGGGGTCAC-ATTCCACATGTCATATTGCAAAACA 332016 Query 109942 CCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCG 110001 |||| |||| |||| | || | | || || |||| | ||||| || Sbjct 332017 CCCTTGCTCACAGGGCTACCCGGGTAAGTTTGATAGTGTCCTTCAATTTGAGCCAATTCA 332076 Query 110002 GATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGGCGA 110061 | ||||| || | || ||| || || |||||||| || || ||||| | ||| Sbjct 332077 CAAGAAGCTTCCAAGGCACCATAGTAGATGGTCTCAAAGATTTGCTTATTCAATTGACGA 332136 Query 110062 GACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTAGACCCTGAACA 110121 | |||||| || || || | | ||||| || |||| |||| || ||||| Sbjct 332137 GCGCGTTCACAATCAAATGGCATTCGCATCAGAATGAAAGCATCAGCTAATCCTTGAACT 332196 Query 110122 CCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAG 110181 || | ||||||||| ||||| ||| ||||| || ||||| ||| || |||||| | Sbjct 332197 CCAATACCAATGGGACGATGACGCATATTAGAACGACGAGCCTGTTCAACTGGGTAATAA 332256 Query 110182 TTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTG 110241 ||| ||| |||| ||||| | ||||| || ||| ||| | | | | | || Sbjct 332257 TTGACGTCAATGATACGATTCAAGTTCTTGGTGACAACCTTGGCAACATGTTTCAATTCT 332316 Query 110242 TCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGA 110301 | | |||| || || ||| | ||||| |||| | || | ||||||||| || | | Sbjct 332317 TTGAAATCAAAAGTGTTCTTATCCTT---GACAAAGGCAGGCAAAGCAATAGAAGCCAAA 332373 Query 110302 TTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAA 110361 ||||| |||| | |||| || | | |||||| | |||||| |||||||| |||||| Sbjct 332374 TTGCAAACAGCAATCTCATCAGGAGCCGAGTATTCAACAATTTCAGTACACAAATTGGAA 332433 Query 110362 CTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGC 110421 | || ||| |||||||| | ||||| ||||| ||||| |||||||| || ||| Sbjct 332434 CATTTGATGGTTCCCAAGTTTTGTTGATTGCTCTTGGAATTGCAAGCATCCTTGTACAGC 332493 Query 110422 ATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCG 110481 ||||| || ||||||||||| || || | | ||| || ||||| | | || Sbjct 332494 ATGTAAGGAGTACCAGTTTCAACTTGAGATTCCAAAATAGCATTCCAAAGCTTTTGAGCA 332553 Query 110482 GGGACAGTTGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCC 110541 | ||| ||| ||||||| | |||||||| ||| | | |||||||| Sbjct 332554 CGAACAACACGACGAGCATGACCTTCATTTTCGTACTTCTCGTAAAGAGCTTCAAATTCA 332613 Query 110542 TGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCA 110601 || | |||||||| | ||| | | || |||||||||||||| | | | Sbjct 332614 GCACCCCAAACATCAGACAAACCAGGACATTCATTTGGGCAGAAGAGGGACCAGTCTTCG 332673 Query 110602 CCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGG 110661 | | ||||| | ||||||||||| ||| |||||||| || |||| | |||||| Sbjct 332674 TCAGCTTCAACACGCTTCATGAACAAATCATTAATCCACAAAGCATAGAACAAGTCACGA 332733 Query 110662 CAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAG 110721 |||| | ||||| | || ||| | ||||||||||| | | || | | Sbjct 332734 GCACGAACTTCTTCCTTCCCAGTGTTCTTCTTCAAATCCAAAAAGTCAAAAACGTCAGCG 332793 Query 110722 TGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG---ACGACCCGCCTGGTTAACA 110778 ||||| ||||| | ||||| || | | ||| ||| | ||| | || | ||| Sbjct 332794 TGCCACGGTTCCAAGTAGACGGCAAAAGCACCCGGACGCTTATTACCACCTTGATCAACG 332853 Query 110779 TAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTT 110838 || || || ||| |||| | || | ||||| |||| || |||| |||||||||||| Sbjct 332854 TAACGAGCCGTGTTATTGTAAACACGAAGCATGGGAACAAGACCATTGGATTGACCATTC 332913 Query 110839 GTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCC 110898 || || ||| || | |||||||||| ||| || | || |||||||||||| Sbjct 332914 GTGCCAGAAATGTACGAACCAGCAGCACGAATGTTGTGAATGTTCAAACCAATACCACCA 332973 Query 110899 GCCCACTTACTAATTTGTGCAC-ACTCTGTGAGTGTACCATAAATACCATCAATCGA--- 110954 || | || ||| |||| | ||| | | || ||||||||||||||||||| Sbjct 332974 GCAGATTTGGAAATCAAAGCACAAGTCT-TTAAAGTTTCATAAATACCATCAATCGAGTC 333032 Query 110955 ATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATT 111014 ||| | | | | ||| || ||||||||||||| |||||| || || || |||| Sbjct 333033 ATCAGAC--ATCGTCAACAAG-AAGCAAGAAGACAGTTGAGGATGATTAGTACCGGCATG 333089 Query 111015 GAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTG---TTGTATGTGTC 111071 |||||| || |||| | ||| | || | | ||| || || || ||||| | || Sbjct 333090 GAAGAGGGTGGGTGAACCGTGAGT-AAAATA-CTTTTCAC-TCATGAAATTGTACGATTC 333146 Query 111072 GAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATATTG 111131 | || ||| | || ||||||| || || ||| ||| ||||||| ||| | ||| Sbjct 333147 AATAGCCGAGTCAATGTCAGTACCGTGCATTCCTATGCAAACACGCATGAGCATGTGTTG 333206 Query 111132 AGG-CGTT 111138 ||| |||| Sbjct 333207 AGGACGTT 333214 >seq1033 Length=267096 Score = 114 bits (126), Expect = 2e-20 Identities = 350/535 (65%), Gaps = 31/535 (6%) Strand=Plus/Plus Query 11496 AATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTT 11555 ||||| |||||||| ||||| || || | | ||| | ||||| ||||| |||| || Sbjct 136283 AATCTGCCGATCGAATCGACCAGGACGCAAGATAGCCTTGTCAAGGATATCAGCACGATT 136342 Query 11556 TGTAGCGGCAATGACTACAATGCC---AGTCTCATTGTCGAAACCGTCCATTTCTGTGAG 11612 |||| | || | || |||| || | || ||| || || |||||||| || Sbjct 136343 TGTACCAGCCAGCACCACAACACCTTCACTCGAATTA---AACCCATCCATTTCAACCAG 136399 Query 11613 AAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAAC---- 11668 ||||| || | ||| | |||||||||||||||| || |||| || Sbjct 136400 CAGCTGATTCAGCGTATTTTCACGCTCATCGTTG---------CCTCCTGAAAAATTTCC 136450 Query 11669 ---GCTTCTT--AC---CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTT 11720 ||||| | || | || || ||||| ||||| ||||| || || ||||| || Sbjct 136451 CTTGCTTCGTGAACGCGCCACGGCATCAATTTCATCAATGAAGACAATGCACGGAGCATT 136510 Query 11721 GGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTC 11780 |||||| || | | ||||| ||||| ||||| | || ||||| |||||||| || Sbjct 136511 GGCACGAGCTTCCTTAAAAAGGTCACGCACACGGGATGGACCTACACCGACGAACATTTC 136570 Query 11781 AACGAAGTTTGCGGCAGAAC-ACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTC 11839 || ||| | | | | ||| ||| || ||| || || | | || ||||| |||| Sbjct 136571 AATGAAATCCGAGCCGGAAATACTAAA-GAATGGTACGCTCGCTTCGCCAGCCGTGGCCT 136629 Query 11840 GAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCT 11899 || | || |||||||||||||| || | |||| | || || || || ||||||| Sbjct 136630 TCGCTAACAGCGTCTTACCCGTACCGGGCGGACCAACTAGCAGAGCACCCTTCGGGATCT 136689 Query 11900 TGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTT 11959 | |||||| | | |||||| | || | |||||||| | |||| || | Sbjct 136690 TTGCACCAAGATCTGTGAAGCGCTTTTGGTTTCGCAAAAAGTCCACGAACTCCATAATCT 136749 Query 11960 CCTCCTTGGCGGAGTCGATACCCTCAACATCGGTGAAACGAG-TCTCAACTTCTT 12013 | | |||||| || | |||| | ||||| | ||||||| ||| || |||| Sbjct 136750 CTTTCTTGGCTTCATCTACACCCGCCACATC-TTTAAACGAGATCTTAATGTCTT 136803 >seq412 Length=287632 Score = 89.7 bits (98), Expect = 6e-13 Identities = 120/166 (72%), Gaps = 6/166 (4%) Strand=Plus/Minus Query 168430 TTACCACGGAGTGGAAATACCCCATAATGATCTCTACCCACGACGGAGAGACCAGCGACA 168489 |||||||| | || || || ||||| | |||| |||||| || | || ||| | || Sbjct 71656 TTACCACGCAAAGGGAAGACTCCATAGTAGTCTCGACCCACTACTGCTAGGCCACCAACG 71597 Query 168490 GCGAGAGTTTTCGCTGAATCACCCTCTGTCACGATGAGTGTACA---CTTTCCAGACTGT 168546 || | ||||| || ||||| ||||| |||||||| | || || ||| || || Sbjct 71596 GCCACTGTTTTGGCCGAATCTCCCTCGGTCACGATTAAAGTGCAGTCCTTACC---CTTG 71540 Query 168547 GCCGTACCAGCTTTGTTCGCATCGTCCAATTTGGGGATACCAGTGA 168592 ||||||||||| | || |||||||| | ||| |||||||| |||| Sbjct 71539 GCCGTACCAGCATGATTGGCATCGTCTAGTTTAGGGATACCTGTGA 71494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588960060837000