Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1301 183 4e-41 seq1923 102 1e-16 seq1526 100 3e-16 seq1679 86.0 7e-12 seq645 82.4 9e-11 >seq1301 Length=515170 Score = 183 bits (202), Expect = 4e-41 Identities = 1102/1742 (63%), Gaps = 54/1742 (3%) Strand=Plus/Plus Query 105596 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAGAGCTTG 105655 || ||||| || ||||| | || | ||||| |||| | |||||| |||| | ||| Sbjct 331495 TAATACATACCAGTCTTCAAACCAAGCTTCCAACCGTAAAAATGCATTGAAGTCAACTTC 331554 Query 105656 GACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAAGCGACCA 105715 || | ||||| | ||| || |||| ||||||||| || |||||||| |||| Sbjct 331555 GAAAAGGTTGGTTCGGCAATGTGAATGTTCAAACTTTGACTTTGATCAATGAAAGCACCA 331614 Query 105716 CGTTGTGCCGCCATATCAATGACATCCTTCATCTTGA----TTTCCCACACTGTGCGGTA 105771 || | || |||| ||||| | | || |||| ||||||| ||||| ||| Sbjct 331615 CGATCAGCAGCCAAGTCAATAATGACTTT----TTGAGAAATTTCCCAAACTGTCTTGTA 331670 Query 105772 GAGATTCTTGATATCATCTGGGATATCTGAGA-TATTTTGAATTGAACCCCCCGCCTTGA 105830 | | ||| | || | ||||| ||| || | ||||| | |||||| ||||| | Sbjct 331671 CAAGTCCTTCAATTCTTGCGGGATG-CTGGGAATCTTTTGTACTGAACCACCCGCAGCAA 331729 Query 105831 CCATGAGATCCTTCATA---TCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGA 105887 ||| ||| |||||| || || || || ||||| | | | ||| || | | Sbjct 331730 TGATGCGATTCTTCATGGATTCATTCCAC--AATCCCAAT-TCAGTCAAATCCTTCATCA 331786 Query 105888 GATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCG 105947 | | |||||||| || || || || | | | || ||||| | | Sbjct 331787 AGTATTGATTGACAATTTGGAATTCACCAGCTAAAACACGACGAGTGTAAATGTTGGAAG 331846 Query 105948 TGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTG 106007 || | || |||||||||||||| | ||| | ||||| | ||| || || || ||||| | Sbjct 331847 TGAAAGGCTCAAAGCATTCATTGTAACCAAGAATTTGAGAGGTAGAAGCAGTCGGCATGG 331906 Query 106008 GTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCC 106067 | || | || | ||||||| ||| | ||| || |||| | | | || Sbjct 331907 GAGCAAGTAACAAGGAATTACGAACACCATGTTCAGAAATCTTAGCCTTCAAAGCTGACC 331966 Query 106068 AGTCGTAGTTGA-GCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGAC 106126 | || | | | || |||| |||| |||| ||| |||| | || || | | | Sbjct 331967 AATCCCACAAGTCGGAAGGGGTCACATTCC-ACATGTCATATTGCAAAACACCCTTGCTC 332025 Query 106127 GTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCC 106186 || |||| | || | |||| |||| || |||||||||||| || Sbjct 332026 ACAGGGCTACCCGGGTAAGTTTGATAGTGTCCTTCAATTTGAGCCAATTCACAAGAAGCT 332085 Query 106187 TCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCT 106246 |||| || | | || ||||| |||||||| | ||||| | || || Sbjct 332086 TCCAAGGCACCATAGTAGATGGTCTCAAAGATTTGCTTATTCAATTGACGAGCGCGTTCA 332145 Query 106247 GAATCAAATGCGTAGCGGCA-CAAAATAAATACATCCGCGAGACCTTGAACACCCAAACC 106305 ||||||||| | | ||| || ||| || |||| || | |||||||| || | ||| Sbjct 332146 CAATCAAATG-GCATTCGCATCAGAATGAAAGCATCAGCTAATCCTTGAACTCCAATACC 332204 Query 106306 AATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTC 106365 ||| || | || ||||||||||| || || ||||| || ||| |||| ||| Sbjct 332205 AATGGGACGATGACGCATATTAGAACGACGAGCCTGTTCAACTGGGTAATAATTGACGTC 332264 Query 106366 AATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATG----AAGTTTTTCAT 106421 ||||| || || | || ||||| |||| ||| | | |||| || | ||| | Sbjct 332265 AATGATACGATTCAAGTTCTTGGTGACAACCTTGGCAA---CATGTTTCAATTCTTTGA- 332320 Query 106422 AATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGC 106481 ||||||||||| ||| || |||||| | || | || || || |||||||||| Sbjct 332321 AATCAAAAGTGT---TCTTATCCTTGACAAAGGCAGGCAAAGCAATAGAAGCCAAATTGC 332377 Query 106482 AAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCT 106541 ||||||| ||||||| | | | ||| || | |||||| |||||||| ||||||| | Sbjct 332378 AAACAGCAATCTCATCAGGAGCCGAGTATTCAACAATTTCAGTACACAAATTGGAACATT 332437 Query 106542 TAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGT 106601 | || || ||||| || | ||| || ||||| ||||| ||||||||||| ||||||| Sbjct 332438 TGATGGTTCCCAAGTTTTGTTGATTGCTCTTGGAATTGCAAGCATCCTTGTACAGCATGT 332497 Query 106602 AGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACATCGGCGGCTGGTA 106661 | || || || || || || || | | ||| || ||||| | | || | | Sbjct 332498 AAGGAGTACCAGTTTCAACTTGAGATTCCAAAATAGCATTCCAAAGCTTTTGAGCACGAA 332557 Query 106662 CAATGGCGTTG-GCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCA 106720 ||| || | || | || || |||||||| ||| || |||||||| || || Sbjct 332558 CAA-CACGACGAGCATGACCTTCATTTTCGTACTTCTCGTAAAGAGCTTCAAATTCAGCA 332616 Query 106721 CCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCC 106780 ||| | || || | ||| || | | ||| ||||| || ||||| | | | Sbjct 332617 CCCCAAACATCAGACAAACCAGGACATTCATTTGGGCAGAAGAGGGACCAGTCTTCGTCA 332676 Query 106781 TCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACAC 106840 | ||||| ||||||||||| | || |||||||| | | || | || | | Sbjct 332677 GCTTCAACACGCTTCATGAACAAATCATTAATCCACAAAGCATAGAACAAGTCACGAGCA 332736 Query 106841 CGAGCCTCTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTG 106899 ||| | ||||| | || ||| || | || || | || || | | || ||||| Sbjct 332737 CGAACTTCTTCCTTCCCAGTGTT-CTTCTTCAAATCCAAAAAGTCAAAAACGTCAGCGTG 332795 Query 106900 CCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTGATTTAC 106953 ||| || || | ||||| || | || ||| ||||| ||| |||||| || Sbjct 332796 CCACGGTTCCAAGTAGACGGCAAAAGCACCC---GGACGCTTATTACCACCTTGATCAAC 332852 Query 106954 ATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATT 107013 || || || ||| || | || |||||||| |||| || ||||| ||||||||||| Sbjct 332853 GTAACGAGCCGTGTTATTGTAAACACGAAGCATGGGAACAAGACCATTGGATTGACCATT 332912 Query 107014 TGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCC 107073 || || ||| || | || | | | || |||| || |||||||| || Sbjct 332913 CGTGCCAGAAATGTACGAACCAGCAGCACGAATGTTGTGAATGTTCAAACCAATACCACC 332972 Query 107074 AGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTC 107133 ||| | || || || ||||| | | | |||| |||| ||||| | || ||||| Sbjct 332973 AGCAGATTTGGAAATCAAAGCACAAGTCTTTAAAGTTTCATAAATACCATCAATCGAGTC 333032 Query 107134 CTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGT--GTACCAGCATTG 107191 || | | | | ||||||| |||| || || || | ||||| |||| | Sbjct 333033 ATCAGACATCGTCAACAAGAAGCAAGAAGACAGTTGAGG--ATGATTAGTACCGGCATGG 333090 Query 107192 AAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTG---TCGTATGTCTCC 107248 |||||||| |||| ||||| | || ||| ||| || || || | ||| | || Sbjct 333091 AAGAGGGTGGGTGAACCGTGAGT-AAAATA-CTTTTCAC-TCATGAAATTGTACGATTCA 333147 Query 107249 AAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGG 107308 | | || |||||||| ||||| || || ||| |||||||| | ||||| ||| Sbjct 333148 ATAGCCGAGTCAATGTCAGTACCGTGCATTCCTATGCAAACACGCATGAGCATGTGTTGA 333207 Query 107309 GG 107310 || Sbjct 333208 GG 333209 >seq1923 Length=74424 Score = 102 bits (112), Expect = 1e-16 Identities = 250/375 (67%), Gaps = 18/375 (5%) Strand=Plus/Minus Query 9191 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9250 ||| ||||| || |||||||| | | || | ||| || | ||| | || || ||||| Sbjct 15136 ACGGTCAAAACGGCCTGGACGCAACAAAGCCTTATCCAGAACATCGGCACGGTTAGTCGC 15077 Query 9251 GGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTT 9310 ||||| || | | || | | |||||||||||||| || || | |||||| Sbjct 15076 TGCGATAACGATCACGCCAGAATTTGGCTCAAAACCATCCATTTCCACCAGCATTTGGTT 15017 Query 9311 AATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCA------GCACTGCGTTGCTT 9364 || |||||||| || ||||| || | ||||||| |||| || || Sbjct 15016 AAGTGTTTGTTCACGCTCATCGTTACC------ACCACCAGTGCCCGCACCACGGTGACG 14963 Query 9365 TCCCACGGCATCAATCTCATCAATGAAGACAATACATG--GTTGATTTTCGCGGGCGATT 9422 ||| || ||||||||||||||||| || | ||||| | | || |||| | || Sbjct 14962 TCCTACCGCATCAATCTCATCAATAAAAATGATACAAGGCGATGCTTTTTTTGCCTGA-- 14905 Query 9423 TCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCG 9482 ||||| | ||| || || | | ||| || |||||||||||||| || || || | || Sbjct 14904 TCAAACATATCACGCACACGTGCGGCACCGACACCAACAAACATTTCAACGAAATCTGAA 14845 Query 9483 GCGGA-ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 9541 | || | | | | ||| || || |||| ||||| ||||| ||| || || | ||| Sbjct 14844 CCTGAGATAGT-AAAGAACGGCACTTTAGCCTCACCTGCAATCGCTTTAGCCAGCAAAGT 14786 Query 9542 CTTACCCGTACCTGG 9556 ||||| || ||||| Sbjct 14785 TTTACCTGTGCCTGG 14771 >seq1526 Length=132622 Score = 100 bits (110), Expect = 3e-16 Identities = 151/210 (72%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || || ||||| || || ||| || |||||||| |||||| | || Sbjct 118691 GGCAAAATCACAATGAAGACCTTCGTCACGGCTGATTAGTTCATTGGAGAAGGTCAAACC 118750 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGA 117391 ||||| | || |||||||||||||| |||| || ||| ||||| ||||| ||||||| Sbjct 118751 GGGCATCAACCCGCGCTTCTTCAACCAGAAAATGGCAGCA-AATGAACCGGAAAAGAAGA 118809 Query 117392 TACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTG--TGTC 117449 |||| ||||| ||||| |||| |||||| || | || ||| || |||| | || Sbjct 118810 TACCTTCCACGGCAGCAAAAGCAACAAGGCGTTCTCCAAAACAGCTAG--TTTGATTTTC 118867 Query 117450 AAACCATTTCATTGCCCATTTCGCCTTCTT 117479 || ||| ||| ||||| | ||||||| Sbjct 118868 AATCCAACGCATAGCCCAGTCTCCCTTCTT 118897 >seq1679 Length=190720 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 190561 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 190620 Query 136224 CAGGTAGGAGCT 136235 | |||||||||| Sbjct 190621 CCGGTAGGAGCT 190632 >seq645 Length=162377 Score = 82.4 bits (90), Expect = 9e-11 Identities = 150/215 (70%), Gaps = 15/215 (7%) Strand=Plus/Minus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 || |||||||| || |||||| || ||| ||| || | || | |||||| ||||| Sbjct 124827 CGGTCAAAGCGCCCCGGACGACAAAGTGCGGGATCGAGTACTTCTAGGCGATTTGTCGCT 124768 Query 9252 GCGATGACAA-CAATACCTG----TTTCATTATCAAAACCATCCATCTCTGTCAAAAGTT 9306 || | |||| || | | | |||| || |||| |||||||| |||||||| | | Sbjct 124767 GCAAGCACAATCACTCCATTAGCCTTTCCTT--CAAACCCATCCATTTCTGTCAACAACT 124710 Query 9307 GGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTC 9366 | |||| || ||||| |||||||| || | | |||||| ||| ||||| Sbjct 124709 GATTAAGCGTCTGTTCTCGTTCATCGTTTGAATTGAGTCCACCAC----GCG---CTTTC 124657 Query 9367 -CCACGGCATCAATCTCATCAATGAAGACAATACA 9400 ||| |||||||||||||| || ||||| ||||| Sbjct 124656 GCCAGCGCATCAATCTCATCGATAAAGACGATACA 124622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589964833644600