Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_015266.1 Length=40555 Score E Sequences producing significant alignments: (Bits) Value seq1167 578 1e-160 >seq1167 Length=1024 Score = 578 bits (640), Expect = 1e-160 Identities = 685/925 (74%), Gaps = 5/925 (1%) Strand=Plus/Plus Query 34845 CCTTATGATCATTGGCACGATTTCGATCAATTTTTTCACGCCAGAAATCCGTTCGCGTTC 34904 |||||| ||||| ||||| ||||| ||||||| || |||||||| || | || || | Sbjct 82 CCTTATCGTCATTCGCACGGTTTCGCCCAATTTTATCCCGCCAGAATTCTGGGCGGGTCC 141 Query 34905 CGGGCAACTTAAAGAGCGAGCAGTCATGTCCATGCCAGAAGCATCCGTGTACGAATATGA 34964 |||| ||||||| || || |||||||||||||||||||| ||||| | || ||||| | Sbjct 142 TGGGCCACTTAAACAGTGAACAGTCATGTCCATGCCAGAAACATCCATTCACAAATATCA 201 Query 34965 CCGCATGATAGCGCGGCAACACAATATCGGGCTTTCCCGGTAAATCCCGGACATGGAGAC 35024 ||||||| || || ||||| |||||||| ||||| || || || | |||| || | Sbjct 202 CCGCATGGTAACGAGGCAATACAATATCAGGCTTGCCTGGCAAGTTTGCTGCATGAAGGC 261 Query 35025 GAAATCGAAAGCCCTGACGATGTAGCAGACTACGAATGAGAATTTCGGGTTTGGTATTAC 35084 | || |||||||| ||||| | ||||||||| || | ||||||||||| || | Sbjct 262 GGAAACGAAAGCCAGAGCGATGCAACAGACTACGGATTAATATTTCGGGTTTAGTGTCGT 321 Query 35085 GCCCCCGTATGCCGGACATCATTCGGCTACGGGTGGCGCTGTCTACCACGTCAACCATCA 35144 ||||||||||||| |||||||| ||||| ||||| | ||||| || | ||||||||| | Sbjct 322 GCCCCCGTATGCCAGACATCATCCGGCTTCGGGTAACACTGTCCACTATGTCAACCATTA 381 Query 35145 GGCGAAAAGCGGAAGTGTTGACGGAGTGCCGTCACGCTCCTCGGCAACGAGCGTCTGGAT 35204 ||| |||||||| | | | | ||| |||| || || || | | | | ||||||||| Sbjct 382 GGCAAAAAGCGGTAACGCTAATGGAATGCCATCGCGTTCATGCTCTATTAACGTCTGGAT 441 Query 35205 GTGTGGAGTCATAATTCTAGCGACCTCTTTCATCACTGGCATCACGACGCTGTTACCAAA 35264 || || | ||| || | || || |||| ||| |||||||||||||| ||||| || || Sbjct 442 ATGAGGCGCCATGATGCGTGCAACTTCTTGCATGACTGGCATCACGACACTGTTGCCGAA 501 Query 35265 TTGCCGGTACGCCTGCGTATCACTAACGGGGATTCGGTACGTATCCGGAAAGCCCATAAG 35324 || || || ||||| || || || |||||||||| | | ||||| ||||| ||||| || Sbjct 502 CTGGCGATATGCCTGAGTGTCGCTTACGGGGATTCTGAATGTATCTGGAAACCCCATCAG 561 Query 35325 CCGCGCACATTCGCGAGGCGTCAGGCGCCGCGGACGCTTACCTTTTCCTTGGTAGACGAG 35384 || || ||||| | || || ||||| || || || || ||| || || | ||| || Sbjct 562 ACGGGCGCATTCTCTTGGTGTAAGGCGTCGAGGGCGTTT---TTTGCCCTGATTGACCAG 618 Query 35385 AATTTCCGAGCCGTCCTTGTGGTATCGAGCCGACAGCGTACGCGTTACGCTGTCCGGATA 35444 |||||| || || |||||||| |||| || ||||| || |||||||| || || || | Sbjct 619 AATTTCTGATCCATCCTTGTGATATCTGGCAGACAGGGTGCGCGTTACACTATCGGGGAA 678 Query 35445 GGCCATGCCAAATCCAAAGCCGTTACCCGCCGCGCGATGCTTCTCGGCATATGCTTGTAG 35504 ||||| ||||| || || ||||| || || || ||||| || ||||| || | ||| || Sbjct 679 TGCCATACCAAAACCGAATCCGTTTCCAGCGGCACGATGTTTTTCGGCGTAAGTTTGGAG 738 Query 35505 GTACGTCCAGAGGTTCGGCGTCAGGGTGTACTTGGATTGGACCTTGCGCTTTTCGTGATC 35564 ||| | ||| || || || || || |||||||| | ||| || |||| |||||| Sbjct 739 GTAAGCCCAAAGATTTGGTGTTAGTGTGTACTTTGGTTGAACAGCATTTTTTTTGTGATC 798 Query 35565 AAAAAATCTCTCACCGTCCCACGGAAGAACTGGCTCGCTGCCGTCAGTCTTGTGCAAAAT 35624 ||||||||| || | ||||| | ||| |||||| | ||||| || ||||| | ||| Sbjct 799 AAAAAATCTGTCTTCATCCCATGACAGATAGGGCTCGGTTCCGTCTGTTTTGTGGAGAAT 858 Query 35625 CGAAGCGAGACGAGG-CCCATCTGCCGGCAAGCGCAGATCGTCCCATGAGAAGCCGGTCT 35683 ||||| || ||||| || |||| | || | | || || ||||||||||||| ||| | Sbjct 859 GGAAGCTAGGCGAGGACCAATCT-CAGGGATATGAAGGTCATCCCATGAGAAGCTGGTTT 917 Query 35684 TCTTCCGGAATCCGACGATGACGATTCGCTCACGATGCTGAGGGGTGAAGTGCTGGCCGT 35743 | | || || || ||||| | || || || |||||||| || |||||| ||| |||| Sbjct 918 TATCTCGAAAACCAACGATAATAATCCGTTCGCGATGCTGTGGTGTGAAGGACTGTCCGT 977 Query 35744 CGATGATCTTGTAATGGACGTCATA 35768 | || | |||||||| || ||||| Sbjct 978 CTATTACTTTGTAATGTACATCATA 1002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129651066666410