Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq100 565 3e-156 >seq100 Length=112360 Score = 565 bits (626), Expect = 3e-156 Identities = 690/941 (73%), Gaps = 0/941 (0%) Strand=Plus/Plus Query 179790 GGTTGGTTCGGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTC 179849 || |||||||| ||| |||||||||| || || || |||| |||| || ||||| || Sbjct 40194 GGATGGTTCGGAGTTGTGATGATTCCTACGCTTTTAACAGCTACTACATGTTTCATTATC 40253 Query 179850 GCCTTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCA 179909 | || ||||| ||||| || || ||||| ||||| || || || || || ||||| || Sbjct 40254 GGTTTTATCGCAGCTCCTCCAGTAGACATTGATGGAATTCGCGAGCCAGTAGCTGGATCC 40313 Query 179910 CTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGT 179969 || | ||||| |||||||| || | || || || ||||| ||| |||||||||||| Sbjct 40314 CTATTATATGGAAACAACATTATTACAGGATCAATTATTCCTAGTTCAAACGCAATTGGT 40373 Query 179970 CTTCACTTCTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGT 180029 |||| || ||||| || |||||||| || || |||| || ||| | |||||||||||| Sbjct 40374 GTTCATTTTTATCCTATATGGGAAGCTGCTTCTATTGATGAATGGTTATATAACGGTGGT 40433 Query 180030 CCTTTCCAACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAG 180089 || | ||||| | || || |||||| | | || | | || | ||||||||| Sbjct 40434 CCATATCAACTGATAGTATTACACTTCTTAACAGGTGTAGCTTGTTATTTAGGTCGTGAG 40493 Query 180090 TGGGAACTTTCTTATCGCTTGGGTATGCGCCCCTGGATCTGCGTAGCATATTCTGCTCCA 180149 |||||| | | |||||| || |||||||| ||||| | || || | ||| |||||| Sbjct 40494 TGGGAATTAAGCTTTCGCTTAGGAATGCGCCCTTGGATTTTTGTTGCCTTTTCCGCTCCA 40553 Query 180150 GTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGAC 180209 || ||||||||| | ||||||||| | | ||||| | || ||||| || ||||| Sbjct 40554 GTAGCTGCAGCAACAGCTGTATTCTTAATTTATCCGATAGGACAAGGAAGTTTTTCTGAT 40613 Query 180210 GCAATGCCCCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCAC 180269 | ||||| | || ||||| || || || |||| |||| | ||||||||||| ||||| Sbjct 40614 GGTATGCCTTTAGGGATTTCAGGGACTTTTAACTTCATGTTAGTTTTCCAAGCCGAGCAT 40673 Query 180270 AACATCCTGATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTG 180329 ||||| | ||||| || || |||||| || ||||| || || || || |||||| | Sbjct 40674 AACATATTAATGCATCCATTTCACATGGCTGGTGTAGCTGGAGTTTTTGGAGGTTCATTA 40733 Query 180330 TTCTCCGCAATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACT 180389 || || ||||||||||| || | || || || ||| | |||||||||| |||||| Sbjct 40734 TTTTCTGCAATGCACGGATCTTTAGTAACTTCATCAATTATTCGTGAAACTTCTGAAAGC 40793 Query 180390 GAGTCCCAGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCT 180449 || || | || || || ||||| ||||| ||||||||||| || || || || |||||| Sbjct 40794 GAATCACCAAATTATGGATACAAATTTGGACAAGAAGAAGAAACATATAATATTGTTGCT 40853 Query 180450 GCACATGGATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCA 180509 || || ||||| ||||| | | || || || || ||| || || ||||| |||||| Sbjct 40854 GCTCACGGATATTTCGGAAGATTAATTTTTCAATACGCAAGTTTTAATAACTCACGTTCA 40913 Query 180510 CTTCACTTCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTA 180569 | ||||||||| | || |||||||| || ||||| || ||||| |||||| | || | Sbjct 40914 TTACACTTCTTCTTAGCTGCATGGCCAGTAGTTGGAATTTGGTTAACTGCATTAGGAATT 40973 Query 180570 AGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAA 180629 || || ||||| || ||| | ||||| || ||||| || || || || |||||| | ||| Sbjct 40974 AGTACAATGGCCTTTAACTTAAACGGATTTAACTTTAATCAATCGATTATTGATAGCCAA 41033 Query 180630 GGTCGTGTGCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTT 180689 || | || | |||||||||||||| | | ||| | || ||| || || ||||| Sbjct 41034 GGAAGAGTAATTAACACTTGGGCAGATATTGTAAACAGAGCAAATCTTGGAATCGAAGTA 41093 Query 180690 ATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTGGC 180730 ||||| || ||||||||||| ||||||||| | || || || Sbjct 41094 ATGCATGAACGTAATGCTCATAACTTCCCATTAGATCTTGC 41134 Score = 508 bits (562), Expect = 7e-139 Identities = 720/1007 (71%), Gaps = 4/1007 (0%) Strand=Plus/Plus Query 181436 GATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGACTACTTCTTTTT 181495 ||||||||||| ||| ||| | ||||| ||||| || |||||||| || | | ||| Sbjct 28586 GATGACTGGCTAAAAAAAGACAGATTTGTATTTGTAGGATGGTCTGGTTTATTATTATTT 28645 Query 181496 CCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACTTTTGTTACGTCGTGG 181555 || || ||| | || | || || ||| | ||||| | || |||||||| || ||| Sbjct 28646 CCGTGCGCGTATTTAGCTCTAGGAGGATGGTTTACTGGAATCACATTTGTTACCTCTTGG 28705 Query 181556 TACACCCACGGATTGGCGTCTTCCTACCTTGAGGGTGCTAATTTCCTTACAGCGGCTGTG 181615 || ||||| || || || |||| | || ||| |||||| | || || ||||| Sbjct 28706 TATACCCATGGCTTAGCTAGCTCCTTTTTAGAAGGTTGTAATTTTTTAACGGCTGCTGTT 28765 Query 181616 TCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAAGCTCAG 181675 ||||| || ||| | |||||| |||||| | ||||| | ||||| || ||||| || Sbjct 28766 TCAACACCAGCTAATAGTATGGGACATTCTTTACTTCTTTTATGGGGACCAGAAGCGCAA 28825 Query 181676 GGCGATTTCGTCCG-CTGGGTCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGG 181734 || |||| || | ||| | || |||| || || ||| | ||||| || | ||||| Sbjct 28826 GGAAATTT-TTCTGTATGGTTTAAAATTGGAGGTCTTTGGACATTTGTTGCCTTACACGG 28884 Query 181735 AGCCTTCGCTCTTATCGGTTTTATGCTCA-GGCAATTTGAACTTGCTCGTCTAATCGGAA 181793 ||| || || || || || ||| |||| | | ||||||||| ||||||| || | |||| Sbjct 28885 AGCTTTTGCACTAATTGGATTT-TGCTTACGACAATTTGAAATTGCTCGATTAGTAGGAA 28943 Query 181794 TCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCGTCTCTGTATTTC 181853 | ||||| |||||||| | || ||||| | || || || | || || || || ||| Sbjct 28944 TTCGACCTTACAATGCTTTAGCATTTTCAGCACCGATCGCCATTTTTGTTTCCGTTTTTT 29003 Query 181854 TCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGGTGTCGCGGCGA 181913 | | |||||| | || ||| | || ||||| ||||| || ||||| ||||| || || | Sbjct 29004 TACTTTATCCTTTAGGGCAAGCAAGCTGGTTTTTTGCACCAAGTTTTGGTGTTGCAGCAA 29063 Query 181914 TTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATA 181973 |||| || || | || ||| | || || || ||||||||||| | ||||| ||||||| Sbjct 29064 TTTTTCGATTTTTACTATTCTTACAAGGATTCCATAATTGGACATTAAATCCATTCCATA 29123 Query 181974 TGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATTCACGGTGTGACCG 182033 ||||||| |||||||| | | || | || ||||| | ||||||||| |||| || | Sbjct 29124 TGATGGGAGTTGCTGGAGTATTAGGAGCTGCGTTACTATGTGCAATTCATGGTGCTACTG 29183 Query 182034 TGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAAGCATTCGATTCAA 182093 | || |||||||| ||| |||| || || ||||||||| || | ||| || | | Sbjct 29184 TTGAAAATACTCTTTATGAAGATGGAGATGCAGCAAATACATTTAGAGCCTTTACCCCTA 29243 Query 182094 CTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTCTCAGATCTTCG 182153 ||||| |||||||| ||||| ||||||||||| ||| | || ||||| || || || | Sbjct 29244 CTCAATCGGAAGAAACATATTCCATGGTTACAGCCAACAGATTTTGGTCACAAATTTTTG 29303 Query 182154 GTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATGG 182213 | | || ||| |||||| || ||||| || || |||||||| ||||||||||| | | Sbjct 29304 GAGTAGCTTTTTCCAATAAAAGATGGTTACACTTTTTTATGCTATTTGTTCCTGTAACCG 29363 Query 182214 GTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACT 182273 || | ||| |||| | || || ||| | || ||||| | ||| | || || ||||||| Sbjct 29364 GTTTATGGGCAAGCGCAATAGGAATTGTAGGACTTGCATTAAACTTACGCGCCTATGACT 29423 Query 182274 TTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGACGTTCTACACAAAGA 182333 || | || |||||| | ||||| ||||||| || || ||||| || ||||| ||||| | Sbjct 29424 TTATTTCGCAAGAATTACGAGCAGCAGAAGATCCGGAATTCGAAACATTCTATACAAAAA 29483 Query 182334 ACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCGATCAACCACATGAGA 182393 | ||| | || |||||||| | | |||| | || || || || |||||||| | Sbjct 29484 ATATTATTTTAAATGAAGGAATAAGATTATGGATGGCTGCACAAGACCAGCCACATGAAA 29543 Query 182394 ACTTTGTGTTCCCTGAGGAAGTATTACCCAGAGGTAACGCACTGTGA 182440 | | | | || || || || |||||||| | || ||||| || ||| Sbjct 29544 ATTATATATTTCCAGAAGAGGTATTACCACGTGGAAACGCGCTTTGA 29590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610380281136600