Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq100 497 1e-135 >seq100 Length=112360 Score = 497 bits (550), Expect = 1e-135 Identities = 693/966 (72%), Gaps = 4/966 (0%) Strand=Plus/Plus Query 169429 AACAGAATCTATGTTGGTTGGTTTGGTGTTCTAATGATTCC-ATGCTTACTCACAGCAGC 169487 |||||| | || |||| ||||| || ||| | |||||||| | |||| | ||||| | Sbjct 40179 AACAGATTATACATTGGATGGTTCGGAGTTGTGATGATTCCTACGCTTT-TAACAGCTAC 40237 Query 169488 AGCATGTTTCATCGTTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGA 169547 |||||||||| | | || || ||||| ||||| || || || || ||||| | || Sbjct 40238 TACATGTTTCATTATCGGTTTTATCGCAGCTCCTCCAGTAGACATTGATGGAATTCGCGA 40297 Query 169548 ACCAGTAGCGGGTTCTTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATC 169607 |||||||| || || | || ||||| |||||||| || | || || || |||| Sbjct 40298 GCCAGTAGCTGGATCCCTATTATATGGAAACAACATTATTACAGGATCAATTATTCCTAG 40357 Query 169608 ATCAAACGCTATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATG 169667 |||||||| || || | || || || || || |||||||| || || |||||||||| Sbjct 40358 TTCAAACGCAATTGGTGTTCATTTTTATCCTATATGGGAAGCTGCTTCTATTGATGAATG 40417 Query 169668 GTTGTATAATGGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGC 169727 ||| ||||| |||||||| ||||| || || | || |||||| | | ||| | | Sbjct 40418 GTTATATAACGGTGGTCCATATCAACTGATAGTATTACACTTCTTAACAGGTGTAGCTTG 40477 Query 169728 ATACATGGGAAGACAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGT 169787 || | || | |||||||| || | | ||||||||||| |||||||| | ||| Sbjct 40478 TTATTTAGGTCGTGAGTGGGAATTAAGCTTTCGCTTAGGAATGCGCCCTTGGATTTTTGT 40537 Query 169788 TGCATACTCTGCACCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCA 169847 ||| | || || |||||| |||| ||| |||||||||||| | || || | || || Sbjct 40538 TGCCTTTTCCGCTCCAGTAGCTGCAGCAACAGCTGTATTCTTAATTTATCCGATAGGACA 40597 Query 169848 GGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGT 169907 || || |||||||||||||| |||| || ||||| ||||| ||||| ||||| || Sbjct 40598 AGGAAGTTTTTCTGATGGTATGCCTTTAGGGATTTCAGGGACTTTTAACTTCATGTTAGT 40657 Query 169908 TTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAAT 169967 ||||||||| ||||||||||| |||||||||| || |||||||| || ||||| ||| | Sbjct 40658 TTTCCAAGCCGAGCATAACATATTAATGCATCCATTTCACATGGCTGGTGTAGCTGGAGT 40717 Query 169968 GTTCGGAGGATCTTTATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAG 170027 || ||||| || ||||| || |||||||| || || | || |||||||| | || | Sbjct 40718 TTTTGGAGGTTCATTATTTTCTGCAATGCACGGATCTTTAGTAACTTCATCAATTATTCG 40777 Query 170028 AGAAACAACAGAGCAAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAAC 170087 ||||| | || || |||| || ||||| || || || ||||||||||||||||| Sbjct 40778 TGAAACTTCTGAAAGCGAATCACCAAATTATGGATACAAATTTGGACAAGAAGAAGAAAC 40837 Query 170088 ATACAACATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATT 170147 ||| || || || || || ||||| || || || | | || || || || || || Sbjct 40838 ATATAATATTGTTGCTGCTCACGGATATTTCGGAAGATTAATTTTTCAATACGCAAGTTT 40897 Query 170148 CAACAACTCAAGAAGTCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTT 170207 || |||||| | ||||||||||| |||| | | || || || | | ||||| Sbjct 40898 TAATAACTCACGTTCATTACACTTCTTCTTAGCTGCATGGCCAGTAGTTGGAATTTGGTT 40957 Query 170208 AACCTCTATGGGTATCTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATC 170267 ||| | | || || | |||||||| || ||||| || || || |||||||| ||||| Sbjct 40958 AACTGCATTAGGAATTAGTACAATGGCCTTTAACTTAAACGGATTTAACTTTAATCAATC 41017 Query 170268 AGTTGTTGAT-GCTAACGGAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAA 170326 || ||||| || || |||| | | | || |||| ||| || |||||||||||| Sbjct 41018 GATTATTGATAGCCAA-GGAAGAGTAATTAACACTTGGGCAGATATTGTAAACAGAGCAA 41076 Query 170327 ACTTGGGTATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGCAT 170386 | | || || ||||| ||||||||| | ||||| || ||||||||| |||| || || | Sbjct 41077 ATCTTGGAATCGAAGTAATGCATGAACGTAATGCTCATAACTTCCCATTAGATCTTGCTT 41136 Query 170387 CTGCTG 170392 | ||| Sbjct 41137 TTTCTG 41142 Score = 441 bits (488), Expect = 8e-119 Identities = 721/1030 (70%), Gaps = 33/1030 (3%) Strand=Plus/Plus Query 170541 GACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGTCTTTTACTTCTG 170600 || |||||| |||| | ||| | |||||||| |||||||||||||| | ||| | | Sbjct 28586 GATGACTGGCTAAAAAAAGACAGATTTGTATTTGTAGGATGGTCTGGTTTATTATTATTT 28645 Query 170601 CCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTCGTTACATCATGG 170660 || || || || || | | || || ||||| || | || || ||||| || ||| Sbjct 28646 CCGTGCGCGTATTTAGCTCTAGGAGGATGGTTTACTGGAATCACATTTGTTACCTCTTGG 28705 Query 170661 TATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTAACAGCAGCAGTT 170720 ||||| ||||| | ||| ||| | | | || || ||||| || |||| || || ||| Sbjct 28706 TATACCCATGGCTTAGCTAGCTCCTTTTTAGAAGGTTGTAATTTTTTAACGGCTGCTGTT 28765 Query 170721 TCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTT--TGGGGACCTGAAGCAC 170778 || ||||| | | ||||| ||| |||| ||| || |||||||| ||||| | Sbjct 28766 TCAACACCAGCTAATAGTATGGGACAT--TCTTTACTTCTTTTATGGGGACCAGAAGCGC 28823 Query 170779 AAGGTTCATTTGTTCGT-TGGTTACAACTCGGAGGTTTATGGAACTTTGTAGCATTACAT 170837 |||| |||| | || ||||| || | |||||| | |||| ||||| || ||||| Sbjct 28824 AAGG-AAATTTTTCTGTATGGTTTAAAATTGGAGGTCTTTGGACATTTGTTGCCTTACAC 28882 Query 170838 GGAGTCTTTGGACTCATAGGTTTCATGCTCA-GACAATTTGAGATCGCAGGACTTGTAGG 170896 |||| |||| ||| || || || |||| | |||||||||| || || || | ||||| Sbjct 28883 GGAGCTTTTGCACTAATTGGATT-TTGCTTACGACAATTTGAAATTGCTCGATTAGTAGG 28941 Query 170897 CATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACTAGCATCTT 170956 || |||||||||| || | ||||| || || ||||| | || | | | || Sbjct 28942 AATTCGACCTTACAATGCTTTAGCATTTTCAGCACCGATCGCCATTTTTGTTTCCGTTTT 29001 Query 170957 TCTGATCTATCCACTAGGTC-AGCACAGTTGGTTCTTCGCACCATCATTCGGTGTCGCAG 171015 | | | ||||| |||| | |||| || ||||| || |||||| || ||||| |||| Sbjct 29002 TTTACTTTATCCTTTAGGGCAAGCA-AGCTGGTTTTTTGCACCAAGTTTTGGTGTTGCAG 29060 Query 171016 CAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAATCCATTTC 171075 |||||||||| | | | ||||| ||||||| ||||| || ||||| |||||||| | Sbjct 29061 CAATTTTTCGATTTTTACTATTCTTACAAGGATTCCATAATTGGACATTAAATCCATTCC 29120 Query 171076 ACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCATTCATGGTGCAA 171135 | |||||||| ||||| ||| || |||| | || ||| ||||||| ||||||||||| | Sbjct 29121 ATATGATGGGAGTTGCTGGAGTATTAGGAGCTGCGTTACTATGTGCAATTCATGGTGCTA 29180 Query 171136 CAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAATAAAATTCAAAGCA 171195 | || | || || | |||||||| || | || | |||| Sbjct 29181 CTGTTGAAAATACTCTTTATGAAGA---------------TG-----GAGATGC--AGCA 29218 Query 171196 CA-ACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGTATGATTACAGCA 171254 | ||||| | |||||| ||||| || |||||||| || ||| ||||||| Sbjct 29219 AATACATTTAGAGCCTTTACCCCTACTCAATCGGAAGAAACATATTCCATGGTTACAGCC 29278 Query 171255 AACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGATTTTTACACTTC 171314 |||||||| |||||||| || ||||| | ||||| || || ||||||| |||||||| Sbjct 29279 AACAGATTTTGGTCACAAATTTTTGGAGTAGCTTTTTCCAATAAAAGATGGTTACACTTT 29338 Query 171315 CTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTCTA 171374 ||||| | || |||||||| | ||| | ||| || | ||||| || ||||| || Sbjct 29339 TTTATGCTATTTGTTCCTGTAACCGGTTTATGGGCAAGCGCAATAGGAATTGTAGGACTT 29398 Query 171375 GCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCA 171434 ||| | ||| | | || || || ||| | || ||||| || ||||||||||||| || Sbjct 29399 GCATTAAACTTACGCGCCTATGACTTTATTTCGCAAGAATTACGAGCAGCAGAAGATCCG 29458 Query 171435 GAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCATGGATG 171494 || ||||| || ||||| || || ||||| || | |||||||| || ||| ||||||| Sbjct 29459 GAATTCGAAACATTCTATACAAAAAATATTATTTTAAATGAAGGAATAAGATTATGGATG 29518 Query 171495 TCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGTGTTACCAAGAGGT 171554 | || ||||| |||||||| || | |||| |||||||| || |||||| | || Sbjct 29519 GCTGCACAAGACCAGCCACATGAAAATTATATATTTCCAGAAGAGGTATTACCACGTGGA 29578 Query 171555 AACGCACTTT 171564 ||||| |||| Sbjct 29579 AACGCGCTTT 29588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579197125053600