Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq100 527 7e-145 >seq100 Length=112360 Score = 527 bits (584), Expect = 7e-145 Identities = 682/942 (72%), Gaps = 0/942 (0%) Strand=Plus/Plus Query 167905 GGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACTATCTGTTTCATCGTC 167964 || |||||||| || |||||||||| || || || |||| |||| |||||||| || Sbjct 40194 GGATGGTTCGGAGTTGTGATGATTCCTACGCTTTTAACAGCTACTACATGTTTCATTATC 40253 Query 167965 GCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCA 168024 | || |||| ||||| || || ||||| || || || || || || || ||||| || Sbjct 40254 GGTTTTATCGCAGCTCCTCCAGTAGACATTGATGGAATTCGCGAGCCAGTAGCTGGATCC 40313 Query 168025 CTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGA 168084 || | ||||| |||||||| || | || || || | ||| ||| || || ||||| Sbjct 40314 CTATTATATGGAAACAACATTATTACAGGATCAATTATTCCTAGTTCAAACGCAATTGGT 40373 Query 168085 CTTCACTTCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGT 168144 |||| || ||||| || |||||||| || || | ||||| ||||| |||||||||||| Sbjct 40374 GTTCATTTTTATCCTATATGGGAAGCTGCTTCTATTGATGAATGGTTATATAACGGTGGT 40433 Query 168145 CCTTTCCAACTAGTAGTCTTTCACTTCCTCATCGGTATCTATGCATACATGGGACGTGAA 168204 || | ||||| |||| || |||||| | | ||| | | || | || ||||| Sbjct 40434 CCATATCAACTGATAGTATTACACTTCTTAACAGGTGTAGCTTGTTATTTAGGTCGTGAG 40493 Query 168205 TGGGAACTTTCATATCGTTTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCA 168264 |||||| | | ||| ||||| ||||| || ||||| | |||||| | || || ||| Sbjct 40494 TGGGAATTAAGCTTTCGCTTAGGAATGCGCCCTTGGATTTTTGTTGCCTTTTCCGCTCCA 40553 Query 168265 GTCGCTGCAGCGAGTGCAGTATTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGAT 168324 || |||||||| | || |||||| || | ||||| | || ||||| ||||| |||||| Sbjct 40554 GTAGCTGCAGCAACAGCTGTATTCTTAATTTATCCGATAGGACAAGGAAGTTTTTCTGAT 40613 Query 168325 GCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCAC 168384 | ||||| | || || ||||| || || |||| |||||| || |||||||| ||||| Sbjct 40614 GGTATGCCTTTAGGGATTTCAGGGACTTTTAACTTCATGTTAGTTTTCCAAGCCGAGCAT 40673 Query 168385 AATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTG 168444 || || | |||||||| || || ||| || || ||||| || ||||| || || Sbjct 40674 AACATATTAATGCATCCATTTCACATGGCTGGTGTAGCTGGAGTTTTTGGAGGTTCATTA 40733 Query 168445 TTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACC 168504 ||| ||| ||||||||| ||| || ||||| || | || | || || |||||| | Sbjct 40734 TTTTCTGCAATGCACGGATCTTTAGTAACTTCATCAATTATTCGTGAAACTTCTGAAAGC 40793 Query 168505 GAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCC 168564 ||||| | ||| || || ||||| || |||||||||||||||||||| || || || || Sbjct 40794 GAATCACCAAATTATGGATACAAATTTGGACAAGAAGAAGAAACATATAATATTGTTGCT 40853 Query 168565 GCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCC 168624 ||||| || || ||||| | || || || |||||||| || || ||||| || || Sbjct 40854 GCTCACGGATATTTCGGAAGATTAATTTTTCAATACGCAAGTTTTAATAACTCACGTTCA 40913 Query 168625 TTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTC 168684 || ||||||||| | ||||||||||| || || || || ||||| || || | || | Sbjct 40914 TTACACTTCTTCTTAGCTGCATGGCCAGTAGTTGGAATTTGGTTAACTGCATTAGGAATT 40973 Query 168685 TCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAG 168744 || ||||| || ||| | ||||| || ||||| || || || || ||||| | || Sbjct 40974 AGTACAATGGCCTTTAACTTAAACGGATTTAACTTTAATCAATCGATTATTGATAGCCAA 41033 Query 168745 GGTCGTGTGTTGAACACCTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGTATGGAAGTT 168804 || | || | ||||| ||||||||| || | ||| | || ||| || || ||||| Sbjct 41034 GGAAGAGTAATTAACACTTGGGCAGATATTGTAAACAGAGCAAATCTTGGAATCGAAGTA 41093 Query 168805 ATGCATGAGCGTAACGCACACAACTTCCCACTCGATCTTGCT 168846 |||||||| ||||| || || ||||||||| | ||||||||| Sbjct 41094 ATGCATGAACGTAATGCTCATAACTTCCCATTAGATCTTGCT 41135 Score = 356 bits (394), Expect = 3e-93 Identities = 687/1008 (68%), Gaps = 4/1008 (0%) Strand=Plus/Plus Query 169319 GATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGTTGGTCTGGTCTACTTCTTCTT 169378 ||||||||||| ||| ||| | |||||||| | || ||||||||| || | | || Sbjct 28586 GATGACTGGCTAAAAAAAGACAGATTTGTATTTGTAGGATGGTCTGGTTTATTATTATTT 28645 Query 169379 CCCACTGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGCGTTTGTTACTTCCTGG 169438 || || ||| | ||| | ||||| ||| | ||||| | | |||||||| || ||| Sbjct 28646 CCGTGCGCGTATTTAGCTCTAGGAGGATGGTTTACTGGAATCACATTTGTTACCTCTTGG 28705 Query 169439 TACACCCACGGACTCGCTTCCAGTTACTTAGAAGGCGCTAACTTCCTCACTGCTGCTGTC 169498 || ||||| || | ||| | | |||||||| ||| || | || |||||||| Sbjct 28706 TATACCCATGGCTTAGCTAGCTCCTTTTTAGAAGGTTGTAATTTTTTAACGGCTGCTGTT 28765 Query 169499 AGTACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCTATGGGGTCCAGAAGCACAA 169558 ||||| ||| | ||||||||| || | || | ||||||| |||||||| ||| Sbjct 28766 TCAACACCAGCTAATAGTATGGGACATTCTTTACTTCTTTTATGGGGACCAGAAGCGCAA 28825 Query 169559 GGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTTGTAGCACTTCATGGT 169618 || |||| | |||| | || | || ||||| |||| ||||| || | || || Sbjct 28826 GGAAATTTTTCTGTATGGTTTAAAATTGGAGGTCTTTGGACATTTGTTGCCTTACACGGA 28885 Query 169619 GCATTTGCATTGATTGGTTTCATGCTTAGG-CAGTTTGAATTGGCACGTCTTATTGGCAT 169677 || |||||| | ||||| || |||||| | || |||||| | || || | | || || Sbjct 28886 GCTTTTGCACTAATTGGATTT-TGCTTACGACAATTTGAAATTGCTCGATTAGTAGGAAT 28944 Query 169678 CCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATTTGTCAGTGTCTTTCT 169737 || ||||| |||||| | ||||| || | || || || | ||||| || ||| | Sbjct 28945 TCGACCTTACAATGCTTTAGCATTTTCAGCACCGATCGCCATTTTTGTTTCCGTTTTTTT 29004 Query 169738 TATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTTTGGAGTATCAGCAAT 169797 | || || | || || | ||||| ||||| || ||||| || ||||||| Sbjct 29005 ACTTTATCCTTTAGGGCAAGCAAGCTGGTTTTTTGCACCAAGTTTTGGTGTTGCAGCAAT 29064 Query 169798 CTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGACGTTGAATCCATTCCACAT 169857 || | || | | ||| | ||||||||||| || ||||| || ||||||||||| || Sbjct 29065 TTTTCGATTTTTACTATTCTTACAAGGATTCCATAATTGGACATTAAATCCATTCCATAT 29124 Query 169858 GATGGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGCTATCCATGGTGTTACAGT 169917 |||||| || || ||| | || || | || || || | ||| || ||||||| ||| || Sbjct 29125 GATGGGAGTTGCTGGAGTATTAGGAGCTGCGTTACTATGTGCAATTCATGGTGCTACTGT 29184 Query 169918 AGAGAACACATTGTATGAAGACGGTGA-GCAGGCAAATACTTTCAAGGCGTTTGATTCGA 169976 || || || | |||||||| || || ||| |||||||| || | || ||| | | Sbjct 29185 TGAAAATACTCTTTATGAAGATGGAGATGCA-GCAAATACATTTAGAGCCTTTACCCCTA 29243 Query 169977 CACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCG 170036 | || ||||| || ||||| ||||| || || ||| | || ||||| || || || | Sbjct 29244 CTCAATCGGAAGAAACATATTCCATGGTTACAGCCAACAGATTTTGGTCACAAATTTTTG 29303 Query 170037 GTATTGCGTTTTCTAACAAGCGTTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGG 170096 | | || ||||| || || | ||| | || ||||| ||| | ||||| ||||| | | Sbjct 29304 GAGTAGCTTTTTCCAATAAAAGATGGTTACACTTTTTTATGCTATTTGTTCCTGTAACCG 29363 Query 170097 GTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTTCGTGCTTACGATT 170156 || | ||| || | | || || ||| | || ||||| | || | || || || || | Sbjct 29364 GTTTATGGGCAAGCGCAATAGGAATTGTAGGACTTGCATTAAACTTACGCGCCTATGACT 29423 Query 170157 TCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAA 170216 | | || || | |||||||||||||||| ||||| || || ||||| || |||| Sbjct 29424 TTATTTCGCAAGAATTACGAGCAGCAGAAGATCCGGAATTCGAAACATTCTATACAAAAA 29483 Query 170217 ACATCCTATTGAATGAAGGACTTCGTGCATGGTTGGCACCTGCTGATCAACCACATGAAA 170276 | || | || ||||||||| | | |||| |||| | || || |||||||||| Sbjct 29484 ATATTATTTTAAATGAAGGAATAAGATTATGGATGGCTGCACAAGACCAGCCACATGAAA 29543 Query 170277 ACTTCATCTTCCCAGAAGAAGTTCTTCCGAGAGGTAACGCACTGTGAT 170324 | | || || |||||||| || | || | || ||||| || |||| Sbjct 29544 ATTATATATTTCCAGAAGAGGTATTACCACGTGGAAACGCGCTTTGAT 29591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574458053308200