Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq100 553 2e-152 >seq100 Length=112360 Score = 553 bits (612), Expect = 2e-152 Identities = 697/952 (73%), Gaps = 4/952 (0%) Strand=Plus/Plus Query 168518 AACAGACTTTATGTTGGTTGGTTCGGTGTCTTAATGATCCC-ATGTTTATTAACAGCAGC 168576 |||||| | || |||| |||||||| || | ||||| || | | || |||||||| | Sbjct 40179 AACAGATTATACATTGGATGGTTCGGAGTTGTGATGATTCCTACGCTT-TTAACAGCTAC 40237 Query 168577 AGCATGTTTCATTGTTGCATTTATTGCTGCACCACCTGTCGATATCGACGGAATCAGAGA 168636 ||||||||||| | | ||||| || || || || || || || || ||||| | || Sbjct 40238 TACATGTTTCATTATCGGTTTTATCGCAGCTCCTCCAGTAGACATTGATGGAATTCGCGA 40297 Query 168637 ACCTGTAGCAGGTGCTCTAATGTATGGAAACAACATCATCTCAGGTGCAGTTGTTCCATC 168696 || ||||| || | ||| | |||||||||||||| || |||| || || |||| Sbjct 40298 GCCAGTAGCTGGATCCCTATTATATGGAAACAACATTATTACAGGATCAATTATTCCTAG 40357 Query 168697 TTCAAACGCAATCGGTCTACACTTCTACCCAATTTGGGAAGCAGCTACAATCGATGAGTG 168756 |||||||||||| ||| | || || || || || |||||||| ||| | || ||||| || Sbjct 40358 TTCAAACGCAATTGGTGTTCATTTTTATCCTATATGGGAAGCTGCTTCTATTGATGAATG 40417 Query 168757 GTTATATAATGGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTAATCGGAATCTCTGC 168816 ||||||||| |||||||| || || || || | || |||||| ||| || | || Sbjct 40418 GTTATATAACGGTGGTCCATATCAACTGATAGTATTACACTTCTTAACAGGTGTAGCTTG 40477 Query 168817 CTACATGGGTAGACAGTGGGAATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGT 168876 || | ||| | ||||||||||| | | |||| ||| | |||||||| | ||| Sbjct 40478 TTATTTAGGTCGTGAGTGGGAATTAAGCTTTCGCTTAGGAATGCGCCCTTGGATTTTTGT 40537 Query 168877 TGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCA 168936 ||| | ||| || |||||| |||||||| || |||||| | | || || | || || Sbjct 40538 TGCCTTTTCCGCTCCAGTAGCTGCAGCAACAGCTGTATTCTTAATTTATCCGATAGGACA 40597 Query 168937 GGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGT 168996 || ||| ||||||||||||||| |||| ||||| || || || ||||||||||| || Sbjct 40598 AGGAAGTTTTTCTGATGGTATGCCTTTAGGGATTTCAGGGACTTTTAACTTCATGTTAGT 40657 Query 168997 ATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTAT 169056 |||||||| ||||| ||||| | |||||||| || || ||||| || ||||| || | Sbjct 40658 TTTCCAAGCCGAGCATAACATATTAATGCATCCATTTCACATGGCTGGTGTAGCTGGAGT 40717 Query 169057 GTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAG 169116 || || || || |||| || |||||||| || || | ||||| || || | || | Sbjct 40718 TTTTGGAGGTTCATTATTTTCTGCAATGCACGGATCTTTAGTAACTTCATCAATTATTCG 40777 Query 169117 AGAGACTACTGAGGAAGAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAAC 169176 || ||| |||| ||||| | || ||||| ||||| || || |||||||||||||| Sbjct 40778 TGAAACTTCTGAAAGCGAATCACCAAATTATGGATACAAATTTGGACAAGAAGAAGAAAC 40837 Query 169177 CTATAATATTGTTGCAGCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTT 169236 |||||||||||||| || || ||||| ||||| |||||||| || || || |||||||| Sbjct 40838 ATATAATATTGTTGCTGCTCACGGATATTTCGGAAGATTAATTTTTCAATACGCAAGTTT 40897 Query 169237 CAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTGTTCCCAGTTGTATGTGTATGGTT 169296 || |||||| | | ||||||||| |||| | | ||||| || | | ||||| Sbjct 40898 TAATAACTCACGTTCATTACACTTCTTCTTAGCTGCATGGCCAGTAGTTGGAATTTGGTT 40957 Query 169297 AACCTCTATGGGTATCTGTACAATGGCATTCAACTTGAACGGATTTAACTTTAACCAATC 169356 ||| | | || || |||||||||| || ||||| ||||||||||||||||| ||||| Sbjct 40958 AACTGCATTAGGAATTAGTACAATGGCCTTTAACTTAAACGGATTTAACTTTAATCAATC 41017 Query 169357 AGTTGTAGATGTTAACGGTAAGA-TCATTCCTACATGGGGTGACGTACTTAACAGAGCAA 169415 || | ||| | || |||| | ||| || |||| || | | |||||||||| Sbjct 41018 GATTATTGATAGCCAAGG-AAGAGTAATTAACACTTGGGCAGATATTGTAAACAGAGCAA 41076 Query 169416 ACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAACTTCCCACTAGA 169467 | ||||| || |||||||||||||| ||||| ||||| ||||||||| |||| Sbjct 41077 ATCTTGGAATCGAAGTAATGCATGAACGTAATGCTCATAACTTCCCATTAGA 41128 Score = 89.7 bits (98), Expect = 6e-13 Identities = 112/147 (76%), Gaps = 5/147 (3%) Strand=Plus/Minus Query 169318 AATGGCATTC-AACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTA 169376 |||||| || ||||| ||||||||||||||||| ||||| || | ||| | || | Sbjct 112357 AATGGCCTTTTAACTTAAACGGATTTAACTTTAATCAATCGATTATTGATAGCCAAGG-A 112299 Query 169377 AGA-TCATTCCTACATGGGGT-GACGTACTTAA-CAGAGCAAACCTTGGTATGGAAGTAA 169433 ||| | ||| || |||| || || ||| ||||||||| ||||| || ||||||| Sbjct 112298 AGAGTAATTAACACTTGGGCCAGATATATGTAAACAGAGCAAATCTTGGAATCGAAGTAA 112239 Query 169434 TGCATGAGCGTAACGCTCACAACTTCC 169460 ||||||| ||||| ||||| ||||||| Sbjct 112238 TGCATGAACGTAATGCTCATAACTTCC 112212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564426324799200