Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq100 477 1e-129 >seq100 Length=112360 Score = 477 bits (528), Expect = 1e-129 Identities = 686/961 (71%), Gaps = 6/961 (1%) Strand=Plus/Plus Query 171847 AACAGAATTTATGTTGGTTGGTTCGGTGTACTCATGATCCC-ATGTTTGCTCACAGCAGC 171905 |||||| | || |||| |||||||| || | ||||| || | | || | ||||| | Sbjct 40179 AACAGATTATACATTGGATGGTTCGGAGTTGTGATGATTCCTACGCTTT-TAACAGCTAC 40237 Query 171906 AGCATGCTTCATCGTTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGA 171965 |||| ||||| | | || || ||||| ||||| || || || || ||||| | || Sbjct 40238 TACATGTTTCATTATCGGTTTTATCGCAGCTCCTCCAGTAGACATTGATGGAATTCGCGA 40297 Query 171966 ACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATC 172025 ||||| || || || | |||||||| |||||||| || | || || || |||| Sbjct 40298 GCCAGTAGCTGGATCCCTATTATATGGAAACAACATTATTACAGGATCAATTATTCCTAG 40357 Query 172026 ATCAAACGCAATAGGTCTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATG 172085 ||||||||||| ||| | || || || ||||| |||||||| || | | |||||||| Sbjct 40358 TTCAAACGCAATTGGTGTTCATTTTTATCCTATATGGGAAGCTGCTTCTATTGATGAATG 40417 Query 172086 GTTGTACAATGGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATCGGTATCTCAGC 172145 ||| || || |||||||| ||||| || || | || |||||| | | ||| | | Sbjct 40418 GTTATATAACGGTGGTCCATATCAACTGATAGTATTACACTTCTTAACAGGTGTAGCTTG 40477 Query 172146 ATACATGGGAAGACAGTGGGAACTATCATACAGATTAGGTATGAGACCATGGATATGTGT 172205 || | || | |||||||| || | | ||||| ||| | || ||||| | ||| Sbjct 40478 TTATTTAGGTCGTGAGTGGGAATTAAGCTTTCGCTTAGGAATGCGCCCTTGGATTTTTGT 40537 Query 172206 AGCATATTCAGCACCTGTATCAGCAGCATTTGCTGTGTTCCTTGTGTATCCATTCGGTCA 172265 || | ||| || || ||| | |||||| ||||| ||| | | ||||| | || || Sbjct 40538 TGCCTTTTCCGCTCCAGTAGCTGCAGCAACAGCTGTATTCTTAATTTATCCGATAGGACA 40597 Query 172266 GGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGT 172325 || || |||||||||||||| |||| || ||||| || || ||||| ||||| || Sbjct 40598 AGGAAGTTTTTCTGATGGTATGCCTTTAGGGATTTCAGGGACTTTTAACTTCATGTTAGT 40657 Query 172326 GTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAAT 172385 |||||||| ||||||||||| |||||||||| || |||||||| || ||||| ||| | Sbjct 40658 TTTCCAAGCCGAGCATAACATATTAATGCATCCATTTCACATGGCTGGTGTAGCTGGAGT 40717 Query 172386 GTTTGGAGGATCTTTATTCTCAGCAATGCACGGTTCTTTAGTTACATCTTCTCTAATCAG 172445 |||||||| || ||||| || ||||||||||| |||||||| || || || | || | Sbjct 40718 TTTTGGAGGTTCATTATTTTCTGCAATGCACGGATCTTTAGTAACTTCATCAATTATTCG 40777 Query 172446 AGAGACAACTGAAGCAGAATCACAGAACTACGGATACAAGTTCGGACAAGAAGAAGAAAC 172505 || || ||||| ||||||| || || |||||||| || ||||||||||||||||| Sbjct 40778 TGAAACTTCTGAAAGCGAATCACCAAATTATGGATACAAATTTGGACAAGAAGAAGAAAC 40837 Query 172506 ATACAACATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTT 172565 ||| || || || || || ||||| || || || | | || || || || || ||| Sbjct 40838 ATATAATATTGTTGCTGCTCACGGATATTTCGGAAGATTAATTTTTCAATACGCAAGTTT 40897 Query 172566 CAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTT 172625 || |||||| | | ||||||||| |||| | | || || || | | ||||| Sbjct 40898 TAATAACTCACGTTCATTACACTTCTTCTTAGCTGCATGGCCAGTAGTTGGAATTTGGTT 40957 Query 172626 AACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATC 172685 ||| | | || || |||||||||| || ||| | ||||| || ||||| || ||||| Sbjct 40958 AACTGCATTAGGAATTAGTACAATGGCCTTTAACTTAAACGGATTTAACTTTAATCAATC 41017 Query 172686 AGTTGTAGAT-GCTAACGGTAAGA-TTGTTCCTACATGGGGTGACGTTCTTAACAGAGCA 172743 || | ||| || || | |||| | || || |||| || || | ||||||||| Sbjct 41018 GATTATTGATAGCCAA--GGAAGAGTAATTAACACTTGGGCAGATATTGTAAACAGAGCA 41075 Query 172744 AACCTAGGTATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCATTAGACCTTGCT 172803 || || || || ||||| ||||||||| | ||||| || |||||||||||||| |||||| Sbjct 41076 AATCTTGGAATCGAAGTAATGCATGAACGTAATGCTCATAACTTCCCATTAGATCTTGCT 41135 Query 172804 T 172804 | Sbjct 41136 T 41136 Score = 426 bits (472), Expect = 2e-114 Identities = 719/1030 (70%), Gaps = 33/1030 (3%) Strand=Plus/Plus Query 172963 GACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGTCTTTTACTTCTA 173022 || |||||| |||| | ||| | || ||||| | |||||||||||| | ||| | | Sbjct 28586 GATGACTGGCTAAAAAAAGACAGATTTGTATTTGTAGGATGGTCTGGTTTATTATTATTT 28645 Query 173023 CCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTCGTTACATCATGG 173082 || || || || | || | || || ||||| |||| || || ||||| || ||| Sbjct 28646 CCGTGCGCGTATTTAGCTCTAGGAGGATGGTTTACTGGAATCACATTTGTTACCTCTTGG 28705 Query 173083 TATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTTTTTAACAGCAGCAGTC 173142 ||||| ||||| | || || | | | ||||| || |||||||| || || || Sbjct 28706 TATACCCATGGCTTAGCTAGCTCCTTTTTAGAAGGTTGTAATTTTTTAACGGCTGCTGTT 28765 Query 173143 TCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTT--GGGGACCTGAAGCAC 173200 || ||||| | | ||||| ||| |||| ||| ||| ||||||| ||||| | Sbjct 28766 TCAACACCAGCTAATAGTATGGGACAT--TCTTTACTTCTTTTATGGGGACCAGAAGCGC 28823 Query 173201 AAGGTTCATTCGTACGT-TGGTTACAACTCGGAGGACTATGGAACTTTGTAGCATTACAT 173259 |||| ||| | || ||||| || | ||||| || |||| ||||| || ||||| Sbjct 28824 AAGGAA-ATTTTTCTGTATGGTTTAAAATTGGAGGTCTTTGGACATTTGTTGCCTTACAC 28882 Query 173260 GGAGTCTTTGGACTCATAGGTTTCATGCTC-CGTCAGTTTGAGATCGCAGGACTTGTAGG 173318 |||| |||| ||| || || || |||| || || ||||| || || || | ||||| Sbjct 28883 GGAGCTTTTGCACTAATTGGATTT-TGCTTACGACAATTTGAAATTGCTCGATTAGTAGG 28941 Query 173319 CATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACTAGCATCTT 173378 || |||||||||| || | ||||| || || ||||| | || | | | || Sbjct 28942 AATTCGACCTTACAATGCTTTAGCATTTTCAGCACCGATCGCCATTTTTGTTTCCGTTTT 29001 Query 173379 TTTAATCTACCCACTAGGGCA-GCACAGTTGGTTCTTCGCACCTTCATTCGGTGTCGCAG 173437 |||| | || || ||||||| ||| || ||||| || ||||| || ||||| |||| Sbjct 29002 TTTACTTTATCCTTTAGGGCAAGCA-AGCTGGTTTTTTGCACCAAGTTTTGGTGTTGCAG 29060 Query 173438 CAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAATCCATTTC 173497 |||| ||||| | | | ||||| ||||||| ||||| || ||||| |||||||| | Sbjct 29061 CAATTTTTCGATTTTTACTATTCTTACAAGGATTCCATAATTGGACATTAAATCCATTCC 29120 Query 173498 ACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCCATTCATGGTGCAA 173557 | |||||||| ||||| ||| || |||| | || ||||||||||| ||||||||||| | Sbjct 29121 ATATGATGGGAGTTGCTGGAGTATTAGGAGCTGCGTTACTATGTGCAATTCATGGTGCTA 29180 Query 173558 CAGTGCAGAACACATTGTATGAAGACACATCACAATATACTGAAGGTAAGATTCAATCCA 173617 | || | || || | |||||||| || |||| | | | | Sbjct 29181 CTGTTGAAAATACTCTTTATGAAGA---------------TG-----GAGATGC-AGCAA 29219 Query 173618 CAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTTATAGTATGATTACAGCGA 173677 || || ||||| ||| ||||| || |||||||| ||| ||| ||||||| | Sbjct 29220 ATACATTTAGAGCCTTTACCCCTACTCAATCGGAAGAAACATATTCCATGGTTACAGCCA 29279 Query 173678 ACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGATTTTTACACTTCC 173737 ||||||| |||||||| || ||||| | || ||||| || ||||||| |||||||| Sbjct 29280 ACAGATTTTGGTCACAAATTTTTGGAGTAGCTTTTTCCAATAAAAGATGGTTACACTTTT 29339 Query 173738 TCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGTATCGTAGGTCTTG 173797 | ||| | || || ||||| | ||| | ||| || | ||||| || ||||| |||| Sbjct 29340 TTATGCTATTTGTTCCTGTAACCGGTTTATGGGCAAGCGCAATAGGAATTGTAGGACTTG 29399 Query 173798 CACTTAACCTTA-GAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGATCCA 173856 || |||| |||| | || || |||||| | || ||||| || |||||||||||||||| Sbjct 29400 CA-TTAAACTTACGCGCCTATGACTTTATTTCGCAAGAATTACGAGCAGCAGAAGATCCG 29458 Query 173857 GAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCATGGATG 173916 || ||||| || ||||| || || ||||| || | |||||||| || ||| ||||||| Sbjct 29459 GAATTCGAAACATTCTATACAAAAAATATTATTTTAAATGAAGGAATAAGATTATGGATG 29518 Query 173917 TCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGTGTTACCAAGAGGT 173976 | | ||| || |||||||| || | ||||||||||||| || |||||| | || Sbjct 29519 GCTGCACAAGACCAGCCACATGAAAATTATATATTTCCAGAAGAGGTATTACCACGTGGA 29578 Query 173977 AACGCACTTT 173986 ||||| |||| Sbjct 29579 AACGCGCTTT 29588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588035285864400