Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq100 471 5e-128 >seq100 Length=112360 Score = 471 bits (522), Expect = 5e-128 Identities = 669/941 (71%), Gaps = 0/941 (0%) Strand=Plus/Plus Query 162427 GGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGTTTCATCGTC 162486 || |||||||| || |||||||||| || || || |||| || | |||||||| || Sbjct 40194 GGATGGTTCGGAGTTGTGATGATTCCTACGCTTTTAACAGCTACTACATGTTTCATTATC 40253 Query 162487 GCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCA 162546 | || |||| ||||| || || ||||| || || || || || || || ||||| || Sbjct 40254 GGTTTTATCGCAGCTCCTCCAGTAGACATTGATGGAATTCGCGAGCCAGTAGCTGGATCC 40313 Query 162547 CTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGT 162606 || | ||||| |||||||| || | || || || |||| ||| |||||||||||| Sbjct 40314 CTATTATATGGAAACAACATTATTACAGGATCAATTATTCCTAGTTCAAACGCAATTGGT 40373 Query 162607 CTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGT 162666 |||| || ||||| || |||||||| || || ||||||| ||| | |||||||||||| Sbjct 40374 GTTCATTTTTATCCTATATGGGAAGCTGCTTCTATTGATGAATGGTTATATAACGGTGGT 40433 Query 162667 CCTTTCCAACTCGTAGTATTCCACTTCCTGATCGGCATCTATGCCTACATGGGACGTGAA 162726 || | ||||| ||||||| |||||| | | || | | || | || ||||| Sbjct 40434 CCATATCAACTGATAGTATTACACTTCTTAACAGGTGTAGCTTGTTATTTAGGTCGTGAG 40493 Query 162727 TGGGAACTCTCTTACCGTCTTGGTATGCGTCCATGGATCTGCGTAGCATACTCTGCACCT 162786 |||||| | | || | || ||||| || ||||| | || || | || || || Sbjct 40494 TGGGAATTAAGCTTTCGCTTAGGAATGCGCCCTTGGATTTTTGTTGCCTTTTCCGCTCCA 40553 Query 162787 GTTGCAGCAGCATCGGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGAC 162846 || || |||||| | || || ||| | | ||||| | || ||||| ||| ||||| Sbjct 40554 GTAGCTGCAGCAACAGCTGTATTCTTAATTTATCCGATAGGACAAGGAAGTTTTTCTGAT 40613 Query 162847 GCAATGCCCTTGGGTATCAGTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCAC 162906 | ||||| || || || || || || |||| |||| | || |||||||| ||||| Sbjct 40614 GGTATGCCTTTAGGGATTTCAGGGACTTTTAACTTCATGTTAGTTTTCCAAGCCGAGCAT 40673 Query 162907 AACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTG 162966 ||||| | |||||||| || |||||| ||||| || || || || || |||||| | Sbjct 40674 AACATATTAATGCATCCATTTCACATGGCTGGTGTAGCTGGAGTTTTTGGAGGTTCATTA 40733 Query 162967 TTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACT 163026 || |||||||||||| ||||| || || || ||| | | ||||| || |||||| Sbjct 40734 TTTTCTGCAATGCACGGATCTTTAGTAACTTCATCAATTATTCGTGAAACTTCTGAAAGC 40793 Query 163027 GAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCA 163086 || |||| || ||||| ||||| || || ||||||||||| ||||| || || || || Sbjct 40794 GAATCACCAAATTATGGATACAAATTTGGACAAGAAGAAGAAACATATAATATTGTTGCT 40853 Query 163087 GCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCC 163146 || || || || ||||| | || || || ||||| ||| || || ||||| ||||| Sbjct 40854 GCTCACGGATATTTCGGAAGATTAATTTTTCAATACGCAAGTTTTAATAACTCACGTTCA 40913 Query 163147 TTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTG 163206 || ||||||||| | ||||||||||| || || || || ||||| || || | || | Sbjct 40914 TTACACTTCTTCTTAGCTGCATGGCCAGTAGTTGGAATTTGGTTAACTGCATTAGGAATT 40973 Query 163207 TCAACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAG 163266 || ||||| || ||| | ||||| || ||||| || || || || ||||| | || Sbjct 40974 AGTACAATGGCCTTTAACTTAAACGGATTTAACTTTAATCAATCGATTATTGATAGCCAA 41033 Query 163267 GGTCGTGTGTTGAACACCTGGGCAGACGTTCTGAACCGTGCAGGTTTGGGTATGGAAGTT 163326 || | || | ||||| |||||||| || | ||| | ||| | | || || ||||| Sbjct 41034 GGAAGAGTAATTAACACTTGGGCAGATATTGTAAACAGAGCAAATCTTGGAATCGAAGTA 41093 Query 163327 ATGCACGAGCGCAATGCTCACAACTTCCCACTTGACCTGGC 163367 ||||| || || |||||||| ||||||||| | || || || Sbjct 41094 ATGCATGAACGTAATGCTCATAACTTCCCATTAGATCTTGC 41134 Score = 459 bits (508), Expect = 3e-124 Identities = 712/1009 (71%), Gaps = 6/1009 (1%) Strand=Plus/Plus Query 163633 GATGACTGGCTTAAGCGCGATCGTTTCGTATTTATTGGTTGGTCTGGATTACTACTTCTT 163692 ||||||||||| || || | || |||||| | || |||||||| ||| || | || Sbjct 28586 GATGACTGGCTAAAAAAAGACAGATTTGTATTTGTAGGATGGTCTGGTTTATTATTATTT 28645 Query 163693 CCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAACTTTCGTTACGTCGTGG 163752 || || ||| | || | || || ||| ||||||| | || || ||||| || ||| Sbjct 28646 CCGTGCGCGTATTTAGCTCTAGGAGGATGGTTTACTGGAATCACATTTGTTACCTCTTGG 28705 Query 163753 TACACCCATGGACTGGCAACTTCCTATCTTGAGGGTGCTAATTTTCTCACAGCGGCTGTG 163812 || |||||||| | || | |||| | | || ||| ||||||| | || || ||||| Sbjct 28706 TATACCCATGGCTTAGCTAGCTCCTTTTTAGAAGGTTGTAATTTTTTAACGGCTGCTGTT 28765 Query 163813 TCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGGGGTCCTGAGGCTCAG 163872 ||||| || ||| | |||||| |||||| | |||||| | ||||| || || || || Sbjct 28766 TCAACACCAGCTAATAGTATGGGACATTCTTTACTTCTTTTATGGGGACCAGAAGCGCAA 28825 Query 163873 GGCGATTTCGTCCG-CTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGG 163931 || |||| || | ||| | || |||| || || |||| ||||| || | ||||| Sbjct 28826 GGAAATTT-TTCTGTATGGTTTAAAATTGGAGGTCTTTGGACATTTGTTGCCTTACACGG 28884 Query 163932 AGCCTTTGCTCTCATTGGTTTCATGCTT-CGGCAATTTGAACTTGCTCGCCTGATTGGAA 163990 ||| ||||| || ||||| || ||||| || ||||||||| ||||||| | | |||| Sbjct 28885 AGCTTTTGCACTAATTGGATT-TTGCTTACGACAATTTGAAATTGCTCGATTAGTAGGAA 28943 Query 163991 TCAGACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTC 164050 | |||| |||||||| | || || || | || || || | || ||| || ||| Sbjct 28944 TTCGACCTTACAATGCTTTAGCATTTTCAGCACCGATCGCCATTTTTGTTTCCGTTTTTT 29003 Query 164051 TCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTTGGAGTGGCAGCAA 164110 | | || ||| | || ||| |||| ||||| || || ||| |||||| || ||||||| Sbjct 29004 TACTTTATCCTTTAGGGCAAGCAAGCTGGTTTTTTGCACCAAGTTTTGGTGTTGCAGCAA 29063 Query 164111 TCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTGAACCCCTTCCATA 164170 | || |||| | ||||| | |||||||| ||||| ||||| || || || ||||||| Sbjct 29064 TTTTTCGATTTTTACTATTCTTACAAGGATTCCATAATTGGACATTAAATCCATTCCATA 29123 Query 164171 TGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTATTCACGGAGTCACAG 164230 |||||||||||||||| || |||| | || || |||| ||| ||||| || | || | Sbjct 29124 TGATGGGAGTTGCTGGAGTATTAGGAGCTGCGTTACTATGTGCAATTCATGGTGCTACTG 29183 Query 164231 TTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCGA 164290 |||||||||| | |||||||||||||| |||||| || |||| || ||| | | Sbjct 29184 TTGAAAATACTCTTTATGAAGATGGAGATGCAGCAAATACATTTAGAGCCTTTACCCCTA 29243 Query 164291 CACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCG 164350 | || ||||| || ||||| ||||| || || ||| | || ||||| || || || | Sbjct 29244 CTCAATCGGAAGAAACATATTCCATGGTTACAGCCAACAGATTTTGGTCACAAATTTTTG 29303 Query 164351 GTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGG 164410 | || || ||||| || || | ||| | || ||||| ||| | ||||| ||||| | | Sbjct 29304 GAGTAGCTTTTTCCAATAAAAGATGGTTACACTTTTTTATGCTATTTGTTCCTGTAACCG 29363 Query 164411 GTCTATGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTTCGTGCTTACGATT 164470 || ||||| || | | || || ||| | || ||||| | || | || || || || | Sbjct 29364 GTTTATGGGCAAGCGCAATAGGAATTGTAGGACTTGCATTAAACTTACGCGCCTATGACT 29423 Query 164471 TTGTAAGTCAAGAGATTA-GAGCAGCAGAAGATCCTGAGTTCGAGACTTTCTATACCAAG 164529 || | ||||| |||| |||||||||||||||| || ||||| || |||||||| || Sbjct 29424 TTATTTCGCAAGA-ATTACGAGCAGCAGAAGATCCGGAATTCGAAACATTCTATACAAAA 29482 Query 164530 AACATCTTATTGAACGAAGGACTCCGTGCATGGTTAGCACCAGTTGACCAGCCAGGAGAA 164589 || || | || || |||||| | | |||| | || || ||||||||| ||| Sbjct 29483 AATATTATTTTAAATGAAGGAATAAGATTATGGATGGCTGCACAAGACCAGCCACATGAA 29542 Query 164590 CGGTTTGTCTTCCCAGAAGAAGTACTGCCGAGAGGTAATGCGCTTTAAT 164638 | | | || |||||||| ||| | || | || || ||||||| || Sbjct 29543 AATTATATATTTCCAGAAGAGGTATTACCACGTGGAAACGCGCTTTGAT 29591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557568910383000