Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq100 439 4e-118 >seq100 Length=112360 Score = 439 bits (486), Expect = 4e-118 Identities = 668/947 (71%), Gaps = 3/947 (0%) Strand=Plus/Plus Query 215330 TACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCAGCTACCACTTGTTTC 215389 ||| |||| ||||| || || | ||||||||| || | ||||||| || |||||| Sbjct 40188 TACATTGGATGGTTCGGAGTTGTGATGATTCCTACGCTTTTAACAGCTACTACATGTTTC 40247 Query 215390 ATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCT 215449 || | | || ||||| || ||||| || || || || ||||| | |||||||| ||| Sbjct 40248 ATTATCGGTTTTATCGCAGCTCCTCCAGTAGACATTGATGGAATTCGCGAGCCAGTAGCT 40307 Query 215450 GGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCA 215509 || || || | ||||| |||||||| || | || | || | ||||||||||||||| Sbjct 40308 GGATCCCTATTATATGGAAACAACATTATTACAGGATCAATTATTCCTAGTTCAAACGCA 40367 Query 215510 ATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAAT 215569 || || | || || || ||||| |||||||| || | |||| |||||| | || || Sbjct 40368 ATTGGTGTTCATTTTTATCCTATATGGGAAGCTGCTTCTATTGATGAATGGTTATATAAC 40427 Query 215570 GGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATTTCTGCATACTGCGGA 215629 ||||| || | |||||| | | || |||||| | | ||| | || || | || Sbjct 40428 GGTGGTCCATATCAACTGATAGTATTACACTTCTTAACAGGTGTAGCTTGTTATTTAGGT 40487 Query 215630 AGACAGTGGGAACTTT-CTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTC 215688 | |||||||| | ||| | | ||||| ||| | |||||||| | |||||| | || Sbjct 40488 CGTGAGTGGGAATTAAGCTTTC-GCTTAGGAATGCGCCCTTGGATTTTTGTTGCCTTTTC 40546 Query 215689 CGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTT 215748 ||| || ||| |||| || || |||||| | | ||||| | || || || ||| Sbjct 40547 CGCTCCAGTAGCTGCAGCAACAGCTGTATTCTTAATTTATCCGATAGGACAAGGAAGTTT 40606 Query 215749 CTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGC 215808 ||||||| |||||| | || || || || || || |||| |||||| |||||||| || Sbjct 40607 TTCTGATGGTATGCCTTTAGGGATTTCAGGGACTTTTAACTTCATGTTAGTTTTCCAAGC 40666 Query 215809 TGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGG 215868 ||||| ||||| | ||||| ||||| |||||| ||||| ||||| || || || || Sbjct 40667 CGAGCATAACATATTAATGCATCCATTTCACATGGCTGGTGTAGCTGGAGTTTTTGGAGG 40726 Query 215869 TTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAAC 215928 |||||| || |||||||||||||| || | || || || || | || | || || | Sbjct 40727 TTCATTATTTTCTGCAATGCACGGATCTTTAGTAACTTCATCAATTATTCGTGAAACTTC 40786 Query 215929 TGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAGGAAACATACAACAT 215988 ||| ||||| | || || || ||||| || |||||||| || |||||||| || || Sbjct 40787 TGAAAGCGAATCACCAAATTATGGATACAAATTTGGACAAGAAGAAGAAACATATAATAT 40846 Query 215989 CGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTC 216048 || ||||| ||||| || || || | | || || ||||||||| ||| || ||||| Sbjct 40847 TGTTGCTGCTCACGGATATTTCGGAAGATTAATTTTTCAATACGCAAGTTTTAATAACTC 40906 Query 216049 AAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAAT 216108 | | | ||||||||| | || |||| || || || | || ||| ||||||| | Sbjct 40907 ACGTTCATTACACTTCTTCTTAGCTGCATGGCCAGTAGTTGGAATTTGGTTAACTGCATT 40966 Query 216109 GGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGA 216168 || | || ||||| || ||| | ||||| || ||||| || || || | | || Sbjct 40967 AGGAATTAGTACAATGGCCTTTAACTTAAACGGATTTAACTTTAATCAATCGATTATTGA 41026 Query 216169 CGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTAT 216228 || | ||| ||| ||||||||||| || | ||||||||| ||||| || Sbjct 41027 TAGCCAAGGAAGAGTAATTAACACTTGGGCAGATATTGTAAACAGAGCAAATCTTGGAAT 41086 Query 216229 GGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGA-CTTG 216274 ||||||||||| || ||||| ||||| |||||||||||||| |||| Sbjct 41087 CGAAGTAATGCATGAACGTAATGCTCATAACTTCCCATTAGATCTTG 41133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745061436229200