Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq100 556 2e-153 >seq100 Length=112360 Score = 556 bits (616), Expect = 2e-153 Identities = 692/945 (73%), Gaps = 6/945 (1%) Strand=Plus/Plus Query 181836 GGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGCGGCAACCATCTGTTTCATCGTT 181895 || ||||| || || ||||||| || || || || | || || | |||||||| | Sbjct 40194 GGATGGTTCGGAGTTGTGATGATTCCTACGCTTTTAACAGCTACTACATGTTTCATTATC 40253 Query 181896 GCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTATCCGCGAACCCGTAGCTGGTTCA 181955 | ||| | ||||| ||||| || || || || || || ||||| || |||||||| || Sbjct 40254 GGTTTTATCGCAGCTCCTCCAGTAGACATTGATGGAATTCGCGAGCCAGTAGCTGGATCC 40313 Query 181956 CTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCATCCTCCAACGCAATTGGT 182015 || | ||||| |||||||| || | || | || | || || |||||||||||| Sbjct 40314 CTATTATATGGAAACAACATTATTACAGGATCAATTATTCCTAGTTCAAACGCAATTGGT 40373 Query 182016 CTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGATGAGTGGCTGTATAACGGTGGT 182075 |||| || || || || ||||||||||| || ||||||| ||| | |||||||||||| Sbjct 40374 GTTCATTTTTATCCTATATGGGAAGCTGCTTCTATTGATGAATGGTTATATAACGGTGGT 40433 Query 182076 CCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCATCTACGCCT---ACATGGGACGT 182132 || | |||||| | || || |||||| | | || | || || | | | || ||| Sbjct 40434 CCATATCAACTGATAGTATTACACTTCTTAACAGG--TGTA-GCTTGTTATTTAGGTCGT 40490 Query 182133 GAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCT 182192 ||||||||| | | |||||||| ||||| || ||||| | ||| || | || ||| Sbjct 40491 GAGTGGGAATTAAGCTTTCGCTTAGGAATGCGCCCTTGGATTTTTGTTGCCTTTTCCGCT 40550 Query 182193 CCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGGTCAAGGTTCGTTCTCC 182252 ||||| ||||||||| | |||||||||||| | ||||| | || ||||| || || Sbjct 40551 CCAGTAGCTGCAGCAACAGCTGTATTCTTAATTTATCCGATAGGACAAGGAAGTTTTTCT 40610 Query 182253 GATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTTGGTTTTCCAAGCTGAG 182312 |||| ||||| | || || ||||| || || |||| ||||| ||||||||||| ||| Sbjct 40611 GATGGTATGCCTTTAGGGATTTCAGGGACTTTTAACTTCATGTTAGTTTTCCAAGCCGAG 40670 Query 182313 CACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGGTGTATTCGGTGGTTCA 182372 || ||||| | |||||||| || |||||| |||||||| || || || || |||||| Sbjct 40671 CATAACATATTAATGCATCCATTTCACATGGCTGGTGTAGCTGGAGTTTTTGGAGGTTCA 40730 Query 182373 CTGTTTAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAG 182432 | ||| |||||||||||| ||||| || || || ||| | | ||||| || |||| Sbjct 40731 TTATTTTCTGCAATGCACGGATCTTTAGTAACTTCATCAATTATTCGTGAAACTTCTGAA 40790 Query 182433 CAAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTATAACATCGTT 182492 || |||| || ||||| ||||| || || ||||||||||| || ||||| || ||| Sbjct 40791 AGCGAATCACCAAATTATGGATACAAATTTGGACAAGAAGAAGAAACATATAATATTGTT 40850 Query 182493 GCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCATCATTCAACAACTCCCGT 182552 || || || || || ||||| | || || || ||||||||| || || ||||| ||| Sbjct 40851 GCTGCTCACGGATATTTCGGAAGATTAATTTTTCAATACGCAAGTTTTAATAACTCACGT 40910 Query 182553 TCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGAATCTGGTTCACCGCACTTGGT 182612 || || ||||||||| | ||||||||||| || |||||||| ||||| || ||| | || Sbjct 40911 TCATTACACTTCTTCTTAGCTGCATGGCCAGTAGTTGGAATTTGGTTAACTGCATTAGGA 40970 Query 182613 GTCTCCACGATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGT 182672 | || ||||| || ||| | ||||| || ||||| || || || || ||||| | Sbjct 40971 ATTAGTACAATGGCCTTTAACTTAAACGGATTTAACTTTAATCAATCGATTATTGATAGC 41030 Query 182673 CAGGGTCGTGTCCTTAACACTTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGAA 182732 || || | || ||||||||||||||||| | | ||| | || |||||| || ||| Sbjct 41031 CAAGGAAGAGTAATTAACACTTGGGCAGATATTGTAAACAGAGCAAATCTTGGAATCGAA 41090 Query 182733 GTTATGCATGAGCGTAACGCACACAACTTCCCACTAGATCTTGCT 182777 || |||||||| ||||| || || ||||||||| ||||||||||| Sbjct 41091 GTAATGCATGAACGTAATGCTCATAACTTCCCATTAGATCTTGCT 41135 Score = 499 bits (552), Expect = 4e-136 Identities = 726/1019 (71%), Gaps = 10/1019 (1%) Strand=Plus/Plus Query 183193 GATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCTGGACTCCTACTTCTT 183252 ||||||||| | ||| || | ||||| ||||| || |||||||| | || | || Sbjct 28586 GATGACTGGCTAAAAAAAGACAGATTTGTATTTGTAGGATGGTCTGGTTTATTATTATTT 28645 Query 183253 CCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 183312 || || ||| | || | || || ||| ||||||| | | |||||||| |||| Sbjct 28646 CCGTGCGCGTATTTAGCTCTAGGAGGATGGTTTACTGGAATCACATTTGTTACCTCTTGG 28705 Query 183313 TATACCCATGGACTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTGTC 183372 ||||||||||| | ||| |||| | | |||||| ||| ||| | ||||| ||||| Sbjct 28706 TATACCCATGGCTTAGCTAGCTCCTTTTTAGAAGGTTGTAATTTTTTAACGGCTGCTGTT 28765 Query 183373 TCGACGCCTGCTGACGCTATGGGTCATTCT---CTTCTGTTACTTTGGGGTCCTGAGTCT 183429 || || || ||| | |||||| |||||| ||||| ||| ||||| || || | Sbjct 28766 TCAACACCAGCTAATAGTATGGGACATTCTTTACTTCTTTTA---TGGGGACCAGAAGCG 28822 Query 183430 CAAGGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCAC 183489 ||||| | ||| |||| || |||| || || |||| ||||| || | ||| Sbjct 28823 CAAGGAAATTTTTCTGTATGGTTTAAAATTGGAGGTCTTTGGACATTTGTTGCCTTACAC 28882 Query 183490 GGTGCCTTTGCTCTCATTGGTTTCATGCTT-CGACAGTTTGAACTTGCTCGCTTGATTGG 183548 || || ||||| || ||||| || ||||| ||||| |||||| ||||||| || | || Sbjct 28883 GGAGCTTTTGCACTAATTGGATTT-TGCTTACGACAATTTGAAATTGCTCGATTAGTAGG 28941 Query 183549 TATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATT 183608 || || |||||||||||| | || || || | || || || ||||||| || || Sbjct 28942 AATTCGACCTTACAATGCTTTAGCATTTTCAGCACCGATCGCCATTTTTGTTTCCGTTTT 29001 Query 183609 CCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGC 183668 | | ||||| | || || | ||||| |||||||| ||||| || || ||||| Sbjct 29002 TTTACTTTATCCTTTAGGGCAAGCAAGCTGGTTTTTTGCACCAAGTTTTGGTGTTGCAGC 29061 Query 183669 AATCTTTAGATTCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCA 183728 ||| ||| |||| || | ||| | || || ||||| || ||||| ||||| || ||||| Sbjct 29062 AATTTTTCGATTTTTACTATTCTTACAAGGATTCCATAATTGGACATTAAATCCATTCCA 29121 Query 183729 TATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCAC 183788 |||||||||||||||||| || |||||| || |||| |||| || ||||||| || Sbjct 29122 TATGATGGGAGTTGCTGGAGTATTAGGAGCTGCGTTACTATGTGCAATTCATGGTGCTAC 29181 Query 183789 AGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATTC 183848 || || ||||| | |||||||||||||| |||||| ||||| | || ||| | Sbjct 29182 TGTTGAAAATACTCTTTATGAAGATGGAGATGCAGCAAATACATTTAGAGCCTTTACCCC 29241 Query 183849 CACTCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCTT 183908 |||||| ||||| || ||||| ||||||||||| || | || ||||||||||| || Sbjct 29242 TACTCAATCGGAAGAAACATATTCCATGGTTACAGCCAACAGATTTTGGTCACAAATTTT 29301 Query 183909 CGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCAT 183968 || || || ||| |||||| | ||||| ||||| |||||| | ||||||||||| | Sbjct 29302 TGGAGTAGCTTTTTCCAATAAAAGATGGTTACACTTTTTTATGCTATTTGTTCCTGTAAC 29361 Query 183969 GGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTTGCTCTTAATCTT-CGTGCTTATG 184027 ||| | |||| | || || || | || ||||| |||| ||| || || |||| Sbjct 29362 CGGTTTATGGGCAAGCGCAATAGGAATTGTAGGACTTGC-ATTAAACTTACGCGCCTATG 29420 Query 184028 ATTTTGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACGTTCTACACAA 184087 | ||| | ||||| | |||||||||||||||| ||||| || || ||||| |||| Sbjct 29421 ACTTTATTTCGCAAGAATTACGAGCAGCAGAAGATCCGGAATTCGAAACATTCTATACAA 29480 Query 184088 AGAACATACTTCTTAATGAAGGACTACGTGCATGGTTAGCACCTTCTGATCAACCACATG 184147 | || || || | ||||||||| || | |||| | || | || || ||||||| Sbjct 29481 AAAATATTATTTTAAATGAAGGAATAAGATTATGGATGGCTGCACAAGACCAGCCACATG 29540 Query 184148 AGAATTTTATATTTCCAGAGGAGGTATTACCTAGAGGCAATGCTCTTTGATGTGTTAAA 184206 | |||| |||||||||||| ||||||||||| | || || || |||||||| ||||| Sbjct 29541 AAAATTATATATTTCCAGAAGAGGTATTACCACGTGGAAACGCGCTTTGATGAATTAAA 29599 Score = 96.9 bits (106), Expect = 4e-15 Identities = 115/152 (76%), Gaps = 3/152 (2%) Strand=Plus/Minus Query 182628 TTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTCCTT 182687 || ||| | ||||| || ||||| || || || || ||||| | || || | || || Sbjct 112349 TTTAACTTAAACGGATTTAACTTTAATCAATCGATTATTGATAGCCAAGGAAGAGTAATT 112290 Query 182688 AACACTTGGG-CAGATGTAT-TGAACCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGC 182745 |||||||||| ||||| ||| | ||| | || |||||| || ||||| |||||||| | Sbjct 112289 AACACTTGGGCCAGATATATGTAAACAGAGCAAATCTTGGAATCGAAGTAATGCATGAAC 112230 Query 182746 GTAACGCACACAACTTCCCACTAGATCTTGCT 182777 |||| || || ||||| ||| ||||||||||| Sbjct 112229 GTAATGCTCATAACTT-CCATTAGATCTTGCT 112199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611679445977000