Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq100 526 2e-144 >seq100 Length=112360 Score = 526 bits (582), Expect = 2e-144 Identities = 690/949 (73%), Gaps = 14/949 (1%) Strand=Plus/Plus Query 164806 GGTTGGTTCGGTGTTCTTATGATCCC--CTGTTTGCTCGCCGCTACAATTTGTTTTATTA 164863 || |||||||| ||| | ||||| || | ||| | | ||||| | ||||| |||| Sbjct 40194 GGATGGTTCGGAGTTGTGATGATTCCTACGCTTT--TAACAGCTACTACATGTTTCATTA 40251 Query 164864 CTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTATTCGTGAACCTGTCGCAGGTT 164923 | || ||||| ||||| || || ||||||||||| ||||| || || || || || | Sbjct 40252 TCGGTTTTATCGCAGCTCCTCCAGTAGACATTGATGGAATTCGCGAGCCAGTAGCTGGAT 40311 Query 164924 CTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCGTTCCGTCTTCTAACGCAATCG 164983 | ||| | || || |||||||| || | || | | |||| ||| |||||||| | Sbjct 40312 CCCTATTATATGGAAACAACATTATTACAGGATCAATTATTCCTAGTTCAAACGCAATTG 40371 Query 164984 GACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGGATGAATGGTTGTACAACGGTG 165043 | |||| || |||||||| ||||||||||| | || ||||||||||| || ||||||| Sbjct 40372 GTGTTCATTTTTATCCTATATGGGAAGCTGCTTCTATTGATGAATGGTTATATAACGGTG 40431 Query 165044 GTCCTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGTGTAGCTTGCTACATGGGTCGTG 165103 |||| || || || | || || |||||| | | ||||||||||| || | ||||||| Sbjct 40432 GTCCATATCAACTGATAGTATTACACTTCTTAACAGGTGTAGCTTGTTATTTAGGTCGTG 40491 Query 165104 AGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATATAGCGCAC 165163 |||||||| | | ||| | || ||||| |||||||||| || || | | ||| | Sbjct 40492 AGTGGGAATTAAGCTTTCGCTTAGGAATGCGCCCTTGGATTTTTGTTGCCTTTTCCGCTC 40551 Query 165164 CTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCTG 165223 | || ||||| || | || || ||| | | ||||| | || ||||| ||||| |||| Sbjct 40552 CAGTAGCTGCAGCAACAGCTGTATTCTTAATTTATCCGATAGGACAAGGAAGTTTTTCTG 40611 Query 165224 ATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTCTTCCAAGCAGAAC 165283 ||||||||||| | || || || || |||||||||| ||||| || |||||||| || | Sbjct 40612 ATGGTATGCCTTTAGGGATTTCAGGGACTTTTAACTTCATGTTAGTTTTCCAAGCCGAGC 40671 Query 165284 ATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTC 165343 ||||||| | |||||||| || |||||| || || ||||| || || || || || Sbjct 40672 ATAACATATTAATGCATCCATTTCACATGGCTGGTGTAGCTGGAGTTTTTGGAGGTTCAT 40731 Query 165344 TTTTCTCTGCTATGCATGGAAGTCTTGTTACTTCCTCACTCGTCCGCGAGACAACTGAAA 165403 | || ||||| ||||| ||| | | || ||||| ||| | | || || || ||||| Sbjct 40732 TATTTTCTGCAATGCACGGATCTTTAGTAACTTCATCAATTATTCGTGAAACTTCTGAA- 40790 Query 165404 CAGAGAGTCA--GAACTACGGTTATAAGTTTGGACAAGAAGAAGAGACCTATAACATCGT 165461 || || ||| || || || || || ||||||||||||||||| || ||||| || || Sbjct 40791 -AGCGAATCACCAAATTATGGATACAAATTTGGACAAGAAGAAGAAACATATAATATTGT 40849 Query 165462 CGCTGCCCACGGGTACTTCGGTCGTCTCATTTTCCAATACGCATCCTTCAACAATTCCCG 165521 ||||| ||||| || ||||| | | ||||| ||||||||| || || || || || Sbjct 40850 TGCTGCTCACGGATATTTCGGAAGATTAATTTTTCAATACGCAAGTTTTAATAACTCACG 40909 Query 165522 TTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGG 165581 ||| | ||||||||| | || |||||||| |||||||| || ||||| ||||| | || Sbjct 40910 TTCATTACACTTCTTCTTAGCTGCATGGCCAGTAGTTGGAATTTGGTTAACTGCATTAGG 40969 Query 165582 TGTTAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCTATTGTTGATAG 165641 |||| || ||||| || ||| | ||||| || ||||| || || || ||| ||||||| Sbjct 40970 AATTAGTACAATGGCCTTTAACTTAAACGGATTTAACTTTAATCAATCGATTATTGATAG 41029 Query 165642 TCA--GAACA-AAATCATCCCTACTTGGGCTGACGTTCTGAACCGTGCTGGTCTGGGTAT 165698 || ||| | ||| | | |||||||| || || | ||| | || ||| || || Sbjct 41030 CCAAGGAAGAGTAATTAAC---ACTTGGGCAGATATTGTAAACAGAGCAAATCTTGGAAT 41086 Query 165699 GGAAGTTATGCATGAGCGTAACGCTCACAACTTCCCCCTCGACCTCGCT 165747 ||||| |||||||| ||||| ||||| |||||||| | || || ||| Sbjct 41087 CGAAGTAATGCATGAACGTAATGCTCATAACTTCCCATTAGATCTTGCT 41135 Score = 504 bits (558), Expect = 8e-138 Identities = 719/1004 (72%), Gaps = 6/1004 (1%) Strand=Plus/Plus Query 166173 GACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTT 166232 || |||||||| ||| ||| | || || ||||| || |||||||| || || || || Sbjct 28586 GATGACTGGCTAAAAAAAGACAGATTTGTATTTGTAGGATGGTCTGGT-TTATTATTATT 28644 Query 166233 CCCACT-GCTTATCTTGCTATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTG 166291 || || ||| | ||| | || || ||| | ||||| | || || || || ||| Sbjct 28645 TCCGTGCGCGTATTTAGCTCTAGGAGGATGGTTTACTGGAATCACATTTGTTACCTCTTG 28704 Query 166292 GTATACTCATGGACTCGCAAGCAGTTATCTGGAGGGTGCAAACTTTCTTACTGCGGCAGT 166351 |||||| ||||| | || ||| | | | || ||| || ||| | || || || || Sbjct 28705 GTATACCCATGGCTTAGCTAGCTCCTTTTTAGAAGGTTGTAATTTTTTAACGGCTGCTGT 28764 Query 166352 TTCTACTCCAGCAGATGCTATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCA 166411 ||| || ||||| || |||||| |||||| |||||||| | ||||| || || || || Sbjct 28765 TTCAACACCAGCTAATAGTATGGGACATTCTTTACTTCTTTTATGGGGACCAGAAGCGCA 28824 Query 166412 AGGGGATTTCGTCAGG-TGGTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACG 166470 ||| |||| || | |||| || ||||||| |||||| | |||||||| | |||| Sbjct 28825 AGGAAATTTT-TCTGTATGGTTTAAAATTGGAGGTCTTTGGACATTTGTTGCCTTACACG 28883 Query 166471 GTGCTTTTGCCCTAATTGGTTTCATGCTT-CGGCAGTTTGAAATCGCTCGTCTAGTAGGT 166529 | |||||||| |||||||| || ||||| || || |||||||| ||||| ||||||| Sbjct 28884 GAGCTTTTGCACTAATTGGATTT-TGCTTACGACAATTTGAAATTGCTCGATTAGTAGGA 28942 Query 166530 ATTCGTCCGTACAATGCAATCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTT 166589 ||||| || |||||||| | || ||||| | || || || | || ||| || ||| Sbjct 28943 ATTCGACCTTACAATGCTTTAGCATTTTCAGCACCGATCGCCATTTTTGTTTCCGTTTTT 29002 Query 166590 CTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCA 166649 | | || ||| | || ||| | || |||||||| || ||| ||| || || ||||| Sbjct 29003 TTACTTTATCCTTTAGGGCAAGCAAGCTGGTTTTTTGCACCAAGTTTTGGTGTTGCAGCA 29062 Query 166650 ATCTTCCGATTCCTCCTTTTCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCAT 166709 || || ||||| | || ||| | ||||||||||| || |||||| | || ||||| ||| Sbjct 29063 ATTTTTCGATTTTTACTATTCTTACAAGGATTCCATAATTGGACATTAAATCCATTCCAT 29122 Query 166710 ATGATGGGTGTAGCAGGTATTCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACA 166769 |||||||| || || || | | || | ||| || || | ||| || ||||||| ||| Sbjct 29123 ATGATGGGAGTTGCTGGAGTATTAGGAGCTGCGTTACTATGTGCAATTCATGGTGCTACT 29182 Query 166770 GTAGAGAACACTCTGTATCAAGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCT 166829 || || || ||||| ||| ||||||| || |||||||| || | || || | || Sbjct 29183 GTTGAAAATACTCTTTATGAAGATGGAGATGCAGCAAATACATTTAGAGCCTTTACCCCT 29242 Query 166830 ACTCAAGAGGAAGAAACCTATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTC 166889 |||||| ||||||||| ||||| ||||||||||| ||| | | |||||| || || || Sbjct 29243 ACTCAATCGGAAGAAACATATTCCATGGTTACAGCCAACAGATTTTGGTCACAAATTTTT 29302 Query 166890 GGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATG 166949 || | || ||| ||||| || ||||| || || |||||||| ||||||||||| | Sbjct 29303 GGAGTAGCTTTTTCCAATAAAAGATGGTTACACTTTTTTATGCTATTTGTTCCTGTAACC 29362 Query 166950 GGTCTGTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGAC 167009 ||| | ||| |||| | || || ||| | || ||||| | ||| | || || |||||| Sbjct 29363 GGTTTATGGGCAAGCGCAATAGGAATTGTAGGACTTGCATTAAACTTACGCGCCTATGAC 29422 Query 167010 TTTGTTTCCCAAGAACTAAGGGCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAG 167069 ||| |||| |||||| || | |||||||| ||||| || || ||||| |||||||| || Sbjct 29423 TTTATTTCGCAAGAATTACGAGCAGCAGAAGATCCGGAATTCGAAACATTCTATACAAAA 29482 Query 167070 AACATTCTCTTGAATGAGGGTATGCGTTCTTGGATGGCAACTATCGATCAACCTCATGAG 167129 || ||| | || ||||| || || | | |||||||| | || || || ||||| Sbjct 29483 AATATTATTTTAAATGAAGGAATAAGATTATGGATGGCTGCACAAGACCAGCCACATGAA 29542 Query 167130 AGTTTCGTATTCCCTGAAGAGGTTCTTCCTAGAGGTAACGCTCT 167173 | || |||| || |||||||| | || | || ||||| || Sbjct 29543 AATTATATATTTCCAGAAGAGGTATTACCACGTGGAAACGCGCT 29586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563645545929600