Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq100 563 1e-155 seq190 89.7 6e-13 >seq100 Length=112360 Score = 563 bits (624), Expect = 1e-155 Identities = 691/942 (73%), Gaps = 1/942 (0%) Strand=Plus/Plus Query 169730 TTGGTTGGTTCGGTGTCTTGATGATCCCATGTCTATTAGCAGCAGCAACCTGCTTTATCG 169789 |||| |||||||| || ||||||| || || ||| |||| | || || || || Sbjct 40192 TTGGATGGTTCGGAGTTGTGATGATTCCTACGCTTTTAACAGCTACTACATGTTTCATTA 40251 Query 169790 TTGCTTTCATCGCAGCTCCACCTGTGGACATCGATGGAATCAGAGAACCTGTAGCAGGTT 169849 | | ||| ||||||||||| || || ||||| |||||||| | || || ||||| || | Sbjct 40252 TCGGTTTTATCGCAGCTCCTCCAGTAGACATTGATGGAATTCGCGAGCCAGTAGCTGGAT 40311 Query 169850 CATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCG 169909 | | | ||||| |||||||| || | || || || |||| |||||||||||| | Sbjct 40312 CCCTATTATATGGAAACAACATTATTACAGGATCAATTATTCCTAGTTCAAACGCAATTG 40371 Query 169910 GTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTG 169969 || | || || |||||||| |||||||| || || | ||||| ||||| |||||||||| Sbjct 40372 GTGTTCATTTTTATCCTATATGGGAAGCTGCTTCTATTGATGAATGGTTATATAACGGTG 40431 Query 169970 GTCCTTATCAATTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATGGGTAGAC 170029 |||| |||||| | | | || |||||| | | || | || || | ||| | Sbjct 40432 GTCCATATCAACTGATAGTATTACACTTCTTAACAGGTGTAGCTTGTTATTTAGGTCGTG 40491 Query 170030 AGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTC 170089 |||||||| || | || ||||| ||||| |||||||| | ||| || | ||| |||| Sbjct 40492 AGTGGGAATTAAGCTTTCGCTTAGGAATGCGCCCTTGGATTTTTGTTGCCTTTTCCGCTC 40551 Query 170090 CAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAG 170149 |||| | |||||| |||||||||||| | ||||| | || || ||| ||| || | Sbjct 40552 CAGTAGCTGCAGCAACAGCTGTATTCTTAATTTATCCGATAGGACAAGGAAGTTTTTCTG 40611 Query 170150 ACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGC 170209 | || |||||| |||| || ||||| || |||||||||||||| || |||||||| |||| Sbjct 40612 ATGGTATGCCTTTAGGGATTTCAGGGACTTTTAACTTCATGTTAGTTTTCCAAGCCGAGC 40671 Query 170210 ACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCAC 170269 | ||||| | ||||| ||||| || ||||| || || ||||| | || ||||| || Sbjct 40672 ATAACATATTAATGCATCCATTTCACATGGCTGGTGTAGCTGGAGTTTTTGGAGGTTCAT 40731 Query 170270 TCTTCTCAGCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGATA 170329 | || || ||||||||||| || | ||||| || || | || | || || | || | Sbjct 40732 TATTTTCTGCAATGCACGGATCTTTAGTAACTTCATCAATTATTCGTGAAACTTCTGAAA 40791 Query 170330 ACGAGTCACAGAACTATGGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTG 170389 ||| |||| || |||||||||||||| |||||||||||||||||||| || ||||||| Sbjct 40792 GCGAATCACCAAATTATGGATACAAATTTGGACAAGAAGAAGAAACATATAATATTGTTG 40851 Query 170390 CAGCACATGGATACTTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTA 170449 | || || ||||| || || ||| | || || ||||| || || ||||| || ||| Sbjct 40852 CTGCTCACGGATATTTCGGAAGATTAATTTTTCAATACGCAAGTTTTAATAACTCACGTT 40911 Query 170450 GTCTTCACTTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTA 170509 | ||||||||| | ||| ||| || ||||| | || ||||||||| || | || | Sbjct 40912 CATTACACTTCTTCTTAGCTGCATGGCCAGTAGTTGGAATTTGGTTAACTGCATTAGGAA 40971 Query 170510 TTTGCACAATGGCATTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGATGGAT 170569 || | |||||||| |||||| | || ||||||||||| || || || || | ||| | Sbjct 40972 TTAGTACAATGGCCTTTAACTTAAACGGATTTAACTTTAATCAATCGATTATTGATAGCC 41031 Query 170570 CTGGTAAAGTAGTTCCTACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAG 170629 || | |||| || || |||||||| || | ||||||||||| || || || |||| Sbjct 41032 AAGGAAGAGTAATTAACACTTGGGCAGATATTGTAAACAGAGCAAATCTTGGAATCGAAG 41091 Query 170630 TAATGCATGAGCGTAATGCACACAACTTCCCACTTGA-CTTG 170670 |||||||||| |||||||| || ||||||||| | || |||| Sbjct 41092 TAATGCATGAACGTAATGCTCATAACTTCCCATTAGATCTTG 41133 Score = 86.0 bits (94), Expect = 7e-12 Identities = 109/146 (75%), Gaps = 3/146 (2%) Strand=Plus/Minus Query 170517 AATGGCATTTAACCTTAAT-GGATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTA 170575 |||||| ||| | ||||| ||||||||||| || || || || | ||| | || | Sbjct 112357 AATGGCCTTTTAACTTAAACGGATTTAACTTTAATCAATCGATTATTGATAGCCAAGGAA 112298 Query 170576 AAGTAGTTCCTACATGGGC-AGACGT-TCTTAACAGAGCAAACCTAGGTATGGAAGTAAT 170633 |||| || || ||||| ||| | | | ||||||||||| || || || |||||||| Sbjct 112297 GAGTAATTAACACTTGGGCCAGATATATGTAAACAGAGCAAATCTTGGAATCGAAGTAAT 112238 Query 170634 GCATGAGCGTAATGCACACAACTTCC 170659 |||||| |||||||| || ||||||| Sbjct 112237 GCATGAACGTAATGCTCATAACTTCC 112212 >seq190 Length=11008 Score = 89.7 bits (98), Expect = 6e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 151096 ATTGATATTGTTGCTGTAAACCTATATCCATTTAAAGAAACTGTTGCTAAACCAGGTGTA 151155 |||||||| | ||| ||||||||||||||| ||| || ||||| ||||| | | Sbjct 1966 ATTGATATGTTAATTGTTAACCTATATCCATTTGAAGCGACGGTTGCAAAACCTGATTGC 2025 Query 151156 ACTCTTGCAGAAGCAATTGAGAATATTGACATTGGTGGTCCTAGTATGGTAAGATCAGCA 151215 || | | ||| |||||||| |||||||| ||||| || ||| ||||| | || || Sbjct 2026 ACCTTAGAAGATGCAATTGAAAATATTGATATTGGCGGGCCTGCGATGGTGCGTTCCGCT 2085 Query 151216 GCAAAGAATTATAAACATGTTGCTGTGTTAAC 151247 || || || | ||| ||||||| ||| |||| Sbjct 2086 GCCAAAAACTGGAAAGATGTTGCGGTGCTAAC 2117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582832226676000