Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_015295.1 Length=47279 Score E Sequences producing significant alignments: (Bits) Value seq1501 82.4 2e-11 >seq1501 Length=377221 Score = 82.4 bits (90), Expect = 2e-11 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 37566 GGTAGGTGAGATCGCAACAGGACTGAAGAATCTGGCGAAAGAGTTACGCTGCCCGGTTAT 37625 ||| || |||||| | || |||||| ||||| || ||| | ||||||||||| || Sbjct 328758 GGTGGGCGAGATCTCGCGGGGCCTGAAGGCGCTGGCCAAGGAGCTGCGCTGCCCGGTGAT 328699 Query 37626 AGCATTGTCTCAGTTGAACCGTAATTTGGAGCAGCGTGCAAACAAGCGACCG-TGCAATG 37684 || |||| ||| ||||||| |||| ||| | ||||||| ||| || ||| Sbjct 328698 CGCGCTGTCGCAGCTGAACCGCTCGGTGGAAACGCGGCCGGACAAGCGTCCGATG--ATG 328641 Query 37685 -CCGACTTACGTGAGTCGGGCGTAATCGAGCAGGAAGCTGATGTGATTTTCATGGTTTAT 37743 ||||| | || |||||||||| ||||||||||| || || | || | | | || Sbjct 328640 TCCGACCTGCGCGAGTCGGGCGCCATCGAGCAGGACGCGGACATCATCATGTTCATCTAC 328581 Query 37744 CGCGACGAGAAGTACA 37759 ||||||||| | |||| Sbjct 328580 CGCGACGAGTACTACA 328565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151167313482930