Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1775 163 6e-35 seq1422 152 1e-31 seq1355 145 2e-29 seq1110 132 1e-25 >seq1775 Length=332822 Score = 163 bits (180), Expect = 6e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || ||||| || || || ||||| ||||||||||| || || | ||| | ||||| Sbjct 274984 CAACACGAGGTGCAGCGTCGATTCTTTCTGAATATTGTAGTCTGCCAAAGTCCGGCCATC 274925 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 |||||||||||| || || ||||| || || || ||||| || ||||| ||||| ||||| Sbjct 274924 TTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATCCCTTCCTTGTC 274865 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 |||||||| || ||||| || |||||| | ||||| ||||| || || |||| || Sbjct 274864 CTGAATTTTCTGTTTGACATTGTCAATGCTATCCGAGGGCTCCACGTCCAGCGTAATGGT 274805 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 ||| || |||| || || ||||| | ||||||| Sbjct 274804 CTTGCCCGTCAGGGTCTTGACGAAAATCTGCATTT 274770 >seq1422 Length=277306 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || ||||||||||| || || | ||| | || || ||| Sbjct 271531 ACCAGGTGGAGCGTAGACTCCTTCTGAATATTGTAGTCAGCCAAAGTACGACCGTCCTCG 271472 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || || || || || || ||||||||||| ||||| || Sbjct 271471 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGTGGAATGCCTTCCTTGTCCTGG 271412 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || |||||||| || || || || | ||||| ||||| || || |||| |||||| Sbjct 271411 ATCTTTTGCTTTACATTGTCGATCGAATCCGAGGGCTCCACGTCCAGCGTAATCGTCTTA 271352 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||||||| ||||| || | |||||| Sbjct 271351 CCAGTCAAAGTCTTTACAAAAATTTGCAT 271323 Score = 140 bits (154), Expect = 7e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||| || || |||||||| || || | ||| | || || ||| Sbjct 271303 ACCAGGTGGAGCGTACACTCCTTCTGTATATTGTAGTCAGCCAAAGTACGACCGTCCTCG 271244 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || || || || || || || || || ||||| ||||| ||||| || Sbjct 271243 AGCTGCTTGCCGGCAAATATCAGACGCTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGG 271184 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || |||||||| ||||| || || | ||||||| |||||| || | || | |||||| Sbjct 271183 ATCTTTTGCTTTACGTTATCGATCGAGTCCGAAGGTTCCACGTCCAAAGTGATCGTCTTA 271124 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || |||| ||| || ||||| | ||||||| Sbjct 271123 CCAGTCAGAGTCTTGACGAAAATTTGCATT 271094 >seq1355 Length=184863 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| ||||||||||| || ||||| || || || ||||| ||| ||||| | || || Sbjct 90670 CAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTC 90729 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 || | |||||| || || || || || ||||| ||||| || ||||| ||||| ||||| Sbjct 90730 CTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTC 90789 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||||| || ||||| ||||| || || | ||| ||| || || ||||| || | || Sbjct 90790 CTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCAACGTCAAGAGTGATTGT 90849 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||| |||||||| || ||||| | ||||| Sbjct 90850 CTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 90882 Score = 140 bits (154), Expect = 7e-28 Identities = 160/214 (75%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACT-CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCAT 194986 ||| ||||||||||| || |||| |||| || || ||||| ||| | ||| | || | Sbjct 90898 CAACACAAGGTGAAGGGTCGACTCCTTTCTGGATGTTGTAGTCGCTCAAAGTACGGCCGT 90957 Query 194987 CTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGT 195046 | || | |||||| || || || || || ||||| ||||| || ||||| ||||| |||| Sbjct 90958 CCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGT 91017 Query 195047 CTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCG 195106 | ||||| || ||||| ||||| || || | ||| ||| || || ||||| || | | Sbjct 91018 CCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCAACGTCAAGAGTGATTG 91077 Query 195107 TCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||||| |||||||| || ||||| | ||||| Sbjct 91078 TCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 91111 Score = 134 bits (148), Expect = 3e-26 Identities = 161/215 (75%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| |||||||||||||| |||||||| || || ||||| ||| ||||| | || || Sbjct 90442 CAACACAAGGTGAAGAGTCGACTCTTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTC 90501 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 || | |||||| || || || || || ||||| ||||| || ||||| ||||| ||||| Sbjct 90502 CTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTC 90561 Query 195048 TTGAATT--TTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACC 195105 | |||| || ||||| || || || || | ||| ||| || || ||||| |||| Sbjct 90562 CTAAATTTCTTCTGCTTCAC-TTGTCGATCGAGTCGGAA-GCTCAACGTCAAGAGTAATA 90619 Query 195106 GTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||||| |||||||| || || || | ||||| Sbjct 90620 GTCTTTCCCGTCAAAGTCTTGACAAAAATCTGCAT 90654 Score = 123 bits (136), Expect = 6e-23 Identities = 157/215 (73%), Gaps = 1/215 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT-CTCCCAT 194986 ||| ||||||||||| || ||||| || || || ||||| ||| | |||| | || | Sbjct 91127 CAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTTACGGCCGT 91186 Query 194987 CTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGT 195046 | || | |||||| || || || || || ||||| ||||| || ||||| ||||| |||| Sbjct 91187 CCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGT 91246 Query 195047 CTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCG 195106 | ||||| || ||||| ||||| || || | ||| || || || || || || | | Sbjct 91247 CCTGAATCTTCTGCTTCACGTTATCGATCGAGTCAGATGGCTCTACGTCGAGAGTGATTG 91306 Query 195107 TCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||||||| |||| || ||||| || | |||||| Sbjct 91307 TCTTTCCCGTCAGCGTCTTTACAAAAATCTGCATT 91341 >seq1110 Length=486086 Score = 132 bits (146), Expect = 1e-25 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 |||||||| ||||| || ||||| | | |||||||| || ||||| || || ||||| Sbjct 256290 TTTTGAATGTTGTAGTCCGCAAGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAGATC 256231 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 | || || ||||| || ||||||||||| ||||| || ||||| ||||| || || ||| Sbjct 256230 AAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTACATTGTCA 256171 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAAC 195132 ||| |||| || |||||| || || |||| ||||| || ||||| || || || || Sbjct 256170 ATGCTGTCTGACGGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTCTTGACAAAA 256111 Query 195133 ACTTGCAT 195140 | ||||| Sbjct 256110 ATCTGCAT 256103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109450824020555