Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1355 111 1e-19 seq1775 100 2e-16 >seq1355 Length=184863 Score = 111 bits (122), Expect = 1e-19 Identities = 162/228 (71%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGA 34813 ||||| | || | ||| || | ||||| || || ||||| ||||| ||||| | Sbjct 91113 CCTCCACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTC 91172 Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGG 34873 || | | || | || |||| ||| || || ||||| ||||| ||||||||||| | || Sbjct 91173 AAAGTTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGG 91232 Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAAC 34933 | || |||||||| ||||||||| || ||| | ||||| ||| | ||| || Sbjct 91233 AATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTATCGATCGAGTCAGATGGCTCTAC 91292 Query 34934 ATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| || || || |||||||| || ||||| ||||| |||||||| Sbjct 91293 GTCGAGAGTGATTGTCTTTCCCGTCAGCGTCTTTACAAAAATCTGCAT 91340 Score = 100 bits (110), Expect = 2e-16 Identities = 162/229 (71%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGT-GCTTTCTTTCTGAATGTTATAGTC-CG 34812 ||||| | || | ||| || | ||||| || | | ||||||| ||||| ||||| | Sbjct 90884 CCTCCACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTTCTGGATGTTGTAGTCGCT 90943 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 || | | || | || |||| ||| || || ||||| ||||| ||||||||||| | | Sbjct 90944 CAAAG-TACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTG 91002 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || |||||||| ||||||||| || ||| | ||||| || | ||||| Sbjct 91003 GAATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCAA 91062 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || || || |||||||| | |||||| || || |||||||| Sbjct 91063 CGTCAAGAGTGATTGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 91111 Score = 98.7 bits (108), Expect = 6e-16 Identities = 165/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 34751 ATTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC 34810 |||||| || | || | ||| || | ||||| || |||||||| ||||| ||||| Sbjct 90424 ATTTCCACCACGCAGGCGCAACACAAGGTGAAGAGTCGACTCTTTCTGGATGTTGTAGTC 90483 Query 34811 CGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTG 34870 || | || | || |||| ||| || || ||||| ||||| ||||||||||| | Sbjct 90484 GCTCAGAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGG 90543 Query 34871 CGGCACCCCCTCCTTGTCGCTAA---TCTTCTGTTTGACGGATGCTATCGATTCACCGGC 34927 || | || |||||||| |||| ||||||| || || | | ||||| || | Sbjct 90544 TGGAATTCCTTCCTTGTC-CTAAATTTCTTCTGCTTCACTTGT-CGATCGAGTCGGAAG- 90600 Query 34928 CTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||||| || | || || || |||||||| | |||||| ||||| |||||||| Sbjct 90601 CTCAACGTCAAGAGTAATAGTCTTTCCCGTCAAAGTCTTGACAAAAATCTGCAT 90654 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| | || | ||| || | ||||| || || ||||| ||||| ||||| Sbjct 90656 CCTCCACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTC 90715 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || | || |||| ||| || || ||||| ||||| ||||||||||| | || Sbjct 90716 AGAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGA 90775 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| ||||||||| || ||| | ||||| || | |||||| Sbjct 90776 ATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCAACG 90835 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | || || || |||||||| | |||||| || || |||||||| Sbjct 90836 TCAAGAGTGATTGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 90882 >seq1775 Length=332822 Score = 100 bits (110), Expect = 2e-16 Identities = 150/209 (72%), Gaps = 17/209 (8%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCG--AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCA 34847 |||||||||||| || ||||| | |||| | || |||| || ||||| || || ||| Sbjct 274963 TTCTTTCTGAATATTGTAGTCTGCCAAAGTC--CGGCCATCTTCGAGCTGCTTGCCAGCA 274906 Query 34848 AATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGAC- 34906 || || || || |||||||| | || | ||| |||||||| ||| ||||||||||| Sbjct 274905 AAGATCAGACGCTGCTGGTCGGGTGGAATCCCTTCCTTGTCCTGAATTTTCTGTTTGACA 274846 Query 34907 ----GGATGCTAT-CGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGA 34961 ||||||| ||| || ||| || || | || ||||| || ||||| || Sbjct 274845 TTGTCAATGCTATCCGA------GGGCTCCACGTCCAGCGTAATGGTCTTGCCCGTCAGG 274792 Query 34962 GTCTTCACAAAGATCTGCATATTCGTAGA 34990 ||||| || || |||||||| ||| |||| Sbjct 274791 GTCTTGACGAAAATCTGCATTTTC-TAGA 274764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324625034238120