Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq100 511 5e-140 >seq100 Length=112360 Score = 511 bits (566), Expect = 5e-140 Identities = 688/957 (72%), Gaps = 3/957 (0%) Strand=Plus/Minus Query 83959 TAACAGAAACTGACGCAAGATCCAACGGGAAGTTATGTGCGTTACGTTCGTGCATCACTT 84018 ||||||||| | |||||||| || ||||||||||| || |||||||| ||||| |||| Sbjct 41145 TAACAGAAA---AAGCAAGATCTAATGGGAAGTTATGAGCATTACGTTCATGCATTACTT 41089 Query 84019 CCATACCAAGCCCGGCACGATTAAGTACATCGGCCCAGGTATTGACAACACGGTTTTGGC 84078 | || ||||| || | || | | ||| ||||| || || | || | ||||| Sbjct 41088 CGATTCCAAGATTTGCTCTGTTTACAATATCTGCCCAAGTGTTAATTACTCTTCCTTGGC 41029 Query 84079 TATCGACAAGACTCTGATTGAAGTTAAATCCATTCAGATTAAATGCCATGGTGCTAACAC 84138 |||| | || ||||| ||||||||||| || | ||||| ||||| || |||| | Sbjct 41028 TATCAATAATCGATTGATTAAAGTTAAATCCGTTTAAGTTAAAGGCCATTGTACTAATTC 40969 Query 84139 CCAGAGCAGCAAACCAAATGCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAAC 84198 | | |||| |||||||| ||||| |||||||| ||||| ||||| ||||| | |||| Sbjct 40968 CTAATGCAGTTAACCAAATTCCAACTACTGGCCATGCAGCTAAGAAGAAGTGTAATGAAC 40909 Query 84199 GACTATTGTTGAAGGAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAA 84258 | || || || || || || || || | | ||||| || ||||||||||||| Sbjct 40908 GTGAGTTATTAAAACTTGCGTATTGAAAAATTAATCTTCCGAAATATCCGTGAGCAGCAA 40849 Query 84259 CAATATTATAAGTTTCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTT 84318 |||||||||| ||||| |||||||| || || ||||| ||||| ||| |||| | ||| Sbjct 40848 CAATATTATATGTTTCTTCTTCTTGTCCAAATTTGTATCCATAATTTGGTGATTCGCTTT 40789 Query 84319 CTGTAGTTTCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAG 84378 | | |||||| || || | || ||||| || | || || ||||||||||| |||| | Sbjct 40788 CAGAAGTTTCACGAATAATTGATGAAGTTACTAAAGATCCGTGCATTGCAGAAAATAATG 40729 Query 84379 CTCCACCGAATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTT 84438 || || || || ||||| || || ||||||||| |||||||| | |||||||| | Sbjct 40728 AACCTCCAAAAACTCCAGCTACACCAGCCATGTGAAATGGATGCATTAATATGTTATGCT 40669 Query 84439 CCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAG 84498 | || ||||| || | |||| |||| || || ||||| || || | ||||| ||||||| Sbjct 40668 CGGCTTGGAAAACTAACATGAAGTTAAAAGTCCCTGAAATCCCTAAAGGCATACCATCAG 40609 Query 84499 AGAAAGAACCTTGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAG 84558 | ||| ||||| || | ||||| | | ||||||||| | ||| || || ||||||| Sbjct 40608 AAAAACTTCCTTGTCCTATCGGATAAATTAAGAATACAGCTGTTGCTGCAGCTACTGGAG 40549 Query 84559 CAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCAC 84618 | || | |||||| | ||||| || ||||| || | ||| | | |||||| |||| Sbjct 40548 CGGAAAAGGCAACAAAAATCCAAGGGCGCATTCCTAAGCGAAAGCTTAATTCCCACTCAC 40489 Query 84619 GACCCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCAC 84678 |||| | ||| | | |||| | | |||||| || || | |||||||| || |||| Sbjct 40488 GACCTAAATAACAAGCTACACCTGTTAAGAAGTGTAATACTATCAGTTGATATGGACCAC 40429 Query 84679 CATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAA 84738 | ||||||| |||||| || ||| || |||||||| |||||||| ||||| | ||||| Sbjct 40428 CGTTATATAACCATTCATCAATAGAAGCAGCTTCCCATATAGGATAAAAATGAACACCAA 40369 Query 84739 TAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAAC 84798 | || || || |||| | | || | ||| ||||||||||| || | || || | Sbjct 40368 TTGCGTTTGAACTAGGAATAATTGATCCTGTAATAATGTTGTTTCCATATAATAGGGATC 40309 Query 84799 CAGCGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGA 84858 |||| |||||||| || || || ||||| || ||||| || || | | || | || | Sbjct 40308 CAGCTACTGGCTCGCGAATTCCATCAATGTCTACTGGAGGAGCTGCGATAAAACCGATAA 40249 Query 84859 TGAAACAGACAGTGGCAGCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAA 84915 ||||||| ||| || | | || || |||||||| | | ||| ||||| |||| Sbjct 40248 TGAAACATGTAGTAGCTGTTAAAAGCGTAGGAATCATCACAACTCCGAACCATCCAA 40192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571258139908200