Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1301 286 4e-72 seq1526 246 3e-60 >seq1301 Length=515170 Score = 286 bits (316), Expect = 4e-72 Identities = 1144/1805 (63%), Gaps = 24/1805 (1%) Strand=Plus/Plus Query 47013 GTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTA 47072 || || || ||||||||||||||||| ||||| | |||| || || |||||||| | Sbjct 331486 GTACGCAAGTAATACATACCAGTCTTCAAACCAAGCTTCCAACCGTAAAAATGCATTGAA 331545 Query 47073 GTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATA 47132 || || || ||| | | ||||| | ||| ||||| || | | |||||| |||||||| Sbjct 331546 GTCAACTTCGAAAAGGTTGGTTCGGCAATGTGAATGTTCAAACTTTGACTTTGATCAATG 331605 Query 47133 AATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTT 47192 || ||||| | |||||| |||| || | ||| || |||| | || ||||| ||||| Sbjct 331606 AAAGCACCACGATCAGCAGCCAAGTCAATAATGACTTTTTGAGAAATTTCCCAAACTGTC 331665 Query 47193 TTATA-AATTTGTTTAATGTCTTCTGGGAGATTAGTA---TTTTGAATAGATCCTCCgtt 47248 || || || | || ||| |||| |||| | | | ||||| | || || || Sbjct 331666 TTGTACAAGTCCTTCAAT-TCTTGCGGGATGCTGGGAATCTTTTGTACTGAACCACCCGC 331724 Query 47249 ttctataattttgtttttta---attcatttgaccaaagttttcgttcagttaatgtttt 47305 | || || || || | ||||||| ||| | | |||||| || || Sbjct 331725 AGCAATGATGCGATTCTTCATGGATTCATT---CCACAATCCCAATTCAGTCAAATCCTT 331781 Query 47306 taaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATT 47365 | | | |||| |||||||| ||||| |||| || || | ||| | || || || Sbjct 331782 CATCAAGTATTGATTGACAATTTGGAATTCACCAGCTAAAACACGACGAGTGTAAATGTT 331841 Query 47366 ACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGG 47425 || | || || | ||||||| | |||| |||||||| || || || || || Sbjct 331842 GGAAGTGAAAGGCTCAAAGCATTCATTGTAACCAAGAATTTGAGAGGTAGAAGCAGTCGG 331901 Query 47426 CATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNG 47485 ||||| |||| ||| ||| ||| | || |||| || |||| Sbjct 331902 CATGGGAGCAAGTAACAAGGAATTACGAACACCATGTTCAGAAATCTTAGCCTTCAAAGC 331961 Query 47486 TTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTT 47545 | ||||||||| | || || || |||||||| | |||||||| | || || || Sbjct 331962 TGACCAATCCCACAAGTCGGAAGGGGTCACATTCCACATGTCATATTGCAAAACACCCTT 332021 Query 47546 ACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACT 47605 || | || ||| || |||| ||| | || | | || ||| | ||||||| Sbjct 332022 GCTCACAGGGCTACCCGGGTAAGTTTGATAGTGTCCTTCAATTTGAGCCAATTCACAAGA 332081 Query 47606 TGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTC 47665 |||||||| |||| ||| || || || ||||| |||| | || | | | || Sbjct 332082 AGCTTCCAAGGCACCATAGTAGATGGTCTCAAAGATTTGCTTATTCAATTGACGAGCGCG 332141 Query 47666 TGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAAT 47725 | | ||||| || || | ||| || ||||||||||| ||||| Sbjct 332142 TTCACAATCAAATGGCATTCGCATCAGAATGAAAGCATCAGCTAATCCTTGAACTCCAAT 332201 Query 47726 ACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTAT 47785 |||||| || | |||| |||||||| ||| | | | ||| || | || | Sbjct 332202 ACCAATGGGACGATGACGCATATTAGAACGACGAGCCTGTTCAACTGGGTAATAATTGAC 332261 Query 47786 ATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAA 47845 || || || ||| | ||| | | | |||| || || Sbjct 332262 GTCAATGATACGATTCAAGTTCTTGGTGACAACCTTGGCAACATGTTTCAATTCTTTGAA 332321 Query 47846 ATCAAACTTGTTATTTA---TAACAAACCTATTAAGTGCTATAGATGCTAGATTACATAC 47902 |||||| |||| || | ||||| | | || ||||| || | ||| || || Sbjct 332322 ATCAAAAGTGTTCTTATCCTTGACAAAGGCAGGCAAAGCAATAGAAGCCAAATTGCAAAC 332381 Query 47903 AGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGAT 47962 ||| | ||||| ||| | |||| | ||||||| ||| | ||| ||||||||| Sbjct 332382 AGCAATCTCATCAGGAGCCGAGTATTCAACAATTTCAGTACACAAATTGGAACATTTGAT 332441 Query 47963 AGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGG 48022 || ||||| ||||| ||||| | || || || |||||||| ||||| |||| Sbjct 332442 GGTTCCCAAGTTTTGTTGATTGCTCTTGGAATTGCAAGCATCCTTGTACAGCATGTAAGG 332501 Query 48023 TGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAAC 48082 || |||||||| | |||||||| | |||| ||||||| | ||| | ||| Sbjct 332502 AGTACCAGTTTCAACTTGAGATTCCAAAATAGCATTCCAAAGCTTTTGAGCACGAACAAC 332561 Query 48083 AGCTCTAGCTTTATTATCATGTTCGTATTTA--GTATATAACTTCTCAAATTCATCCCCA 48140 | | ||| | | |||| |||||| || ||| | | |||| ||||||| | || Sbjct 332562 ACGACGAGCATGACCTTCATTTTCGTACTTCTCGTAAAGAGCTTC--AAATTCAGCACCC 332619 Query 48141 TACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTT 48200 | |||| | || |||||||||||||| || || | | ||||| || || ||| | Sbjct 332620 CAAACATCAGACAAACCAGGACATTCATTTGGGCAGAAGAGGGACCAGTCTTCGTCAGCT 332679 Query 48201 TTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATA-AATAAATCCCTAGTTCT 48259 | || | |||| || | ||| ||||| | ||| ||| || || || | || | Sbjct 332680 TCAACACGCTTCATGAACAAATCATTAATCCACAAAGC-ATAGAACAAGTCACGAGCACG 332738 Query 48260 TAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCA 48319 | |||||| || ||| | ||| | || | || | |||||| | | ||||| ||||| Sbjct 332739 AACTTCTTCCTTCCCAGTGTTCTTCTTCAAATCCAAAAAGTCAAAAACGTCAGCGTGCCA 332798 Query 48320 TGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCT 48379 ||||| || || | || | |||| || || |||||||| |||||||| | || | Sbjct 332799 CGGTTCCAAGTAGACGGCAAAAGCACCCGGACGCTTATTACCACCTTGATCAACGTAACG 332858 Query 48380 GGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCC 48439 || || || || ||||| | | ||| || |||| |||||| ||| |||||| || || Sbjct 332859 AGCCGTGTTATTGTAAACACGAAGCATGGGAACAAGACCATTGGATTGACCATTCGTGCC 332918 Query 48440 CGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCAT 48499 ||||| || ||| ||| | || || ||| | ||| |||||||| || Sbjct 332919 AGAAATGTACGAACCAGCAGCACGAATGTTGTGAATGTTCAAACCAATACCACCAGCAGA 332978 Query 48500 TTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTAT 48559 ||| || || | |||||| || | || |||||||| || || || ||||| Sbjct 332979 TTTGGAAATCAAAGCACAAGTCTTTAAAGTTTCATAAATACCATCAATCGAGTCATCAGA 333038 Query 48560 CATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGT 48619 ||| | || | || ||| ||||| ||| |||||| ||| || | || || | || Sbjct 333039 CATCGTCAACAAGAAGCAAGAAGACAGTTGAGGATGATTAGTACCGGCATGGAAGAGGGT 333098 Query 48620 TGGAGATGCATGAATAAA--CCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAA 48677 || || | ||| |||| | |||| || || || || || | ||||||| | || Sbjct 333099 GGGTGAACCGTGAGTAAAATACTTTTCACTCAT--GAAATTGTACGATTCAATAGCCGAG 333156 Query 48678 TCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCA 48737 || || || || || ||||| | |||||||| | ||| | |||||| | |||| Sbjct 333157 TCAATGTCAGTACCGTGCATTCCTATGCAAACACGCATGAGCATGTGTTGAGGACGTTCA 333216 Query 48738 ACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAG 48797 || | | ||| ||||||| | |||| ||| | || || |||||||| || Sbjct 333217 ACGACGCGTTCATTAATTTTCATCAAGTATGCACGTTCAAGAGTCTTGAAACCAAAGTAA 333276 Query 48798 TTGTA 48802 ||||| Sbjct 333277 TTGTA 333281 >seq1526 Length=132622 Score = 246 bits (272), Expect = 3e-60 Identities = 583/874 (67%), Gaps = 10/874 (1%) Strand=Plus/Plus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 ||||| || || |||| | ||||||||||| ||||| ||||| | || || || | Sbjct 118395 TTTTGGTACTCACCAACCTTCTTTTCAAAGAAGTTAGTCTTTCCTTGCAAGGAAATCAAG 118454 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 ||||| ||||| || ||||| | |||||| || | ||| | | | | | | Sbjct 118455 TCCATGAAATCGAAAGGATTGTCTACATTGTAAAATTTGGGGCACTGCAGGGCAACCAAC 118514 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 | | ||| || ||||||| ||| || | ||| | | | |||||||| || || || Sbjct 118515 AAGCGATCAGCAACAAATTCAATGTACTGGCACATGAGAGCGCAATTCATGCCAATCAAA 118574 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT- 18908 ||| || | || || || || ||||| ||||| || || || || || | || || Sbjct 118575 GCAACGGGCAAGGCCTCCGTCAGGAATTCCTGTTCAATCTTGACAGCTTCCGTAATGATG 118634 Query 18909 --AGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCA 18966 || || | ||| | | ||| || | | || | || | |||||| ||| Sbjct 118635 TGAGTTATAGTGGCATCAGAAGGACGAGTGTGACGCAAGTGCCTGAATAACAAACAGGCA 118694 Query 18967 AAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGC 19026 ||||||||||| || || ||||| | || || | |||||| || || || ||||| ||| Sbjct 118695 AAATCACAATGAAGACCTTCGTCACGGCTGATTAGTTCATTGGAGAAGGTCAAACCGGGC 118754 Query 19027 ATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCT 19086 |||| || | || || |||||||| || | ||||||||| || |||||||| |||||| Sbjct 118755 ATCAACCCGCGCTTCTTCAACCAGAAAATGGCAGCAAATGAACCGGAAAAGAAGATACCT 118814 Query 19087 TCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGC-ATCATTATTATGAATCCA 19145 || || || ||||||||||| || | ||||||| ||| ||| | | ||| | |||||| Sbjct 118815 TCCACGGCAGCAAAAGCAACAAGGCGTTCTCCAAAAC-AGCTAGTTTGATTTTCAATCCA 118873 Query 19146 TTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAG 19205 || ||||| || ||||||| ||||| || || || || || | ||| || || Sbjct 118874 ACGCATAGCCCAGTCTCCCTTCTTGCGAACACAAGGGATGGTGTCAATGGCATTGAAAAG 118933 Query 19206 ATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGA 19265 | |||||||| ||| || || || | ||| || | | | ||||||||| | Sbjct 118934 GAATTTACGCTCAACTGGGTCACGAATGTAGGTATCAATGAGGAGAGAGTACATTTCAGC 118993 Query 19266 ATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTAC 19325 ||||| ||||| || || || || |||||||| || | ||||||| | || || Sbjct 118994 GTGAATGTTTTCAATCATGATTTGGAACCCGTAAAAGCAACGAGCTTCTGGAACTTGAAC 119053 Query 19326 TTC-ACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAA 19384 ||| | | ||| | ||||| |||||||| || || |||||| || ||||| | Sbjct 119054 TTCTTGTGCGAAA-CGAGTAACCAAGTTTTCATTGACAATACCATCAGAGGCAGCAAAGA 119112 Query 19385 ATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAA---TGTATTCCAATCAT 19441 | || || ||| | || ||| | |||||| || || | | ||||| | Sbjct 119113 AAGCCAAAACACGAGAAACAAAGAATCGTTCATCGTTAGTCAACTTTTCGTCCCAATGTT 119172 Query 19442 TAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTAT 19501 | || || || || | || |||||||| | ||||| || ||||| || || || || | Sbjct 119173 TTATGTCCTTGGAAAGGTCAACTTCTTCGGCAGTCCAGAAGGAAGCTTCAGCCTTCTTGT 119232 Query 19502 ACATGTTCCATATATCACGATATTGTATAGGAAA 19535 | | | ||| ||||| |||| | || ||||| Sbjct 119233 AGAATTGCCAAATATCGTGATACTTGATGGGAAA 119266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562093587930600