Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1166 214 1e-49 seq590 150 1e-30 seq1543 145 6e-29 seq763 118 9e-21 seq1630 104 2e-16 seq100 95.1 1e-13 seq1422 91.5 1e-12 >seq1166 Length=243427 Score = 214 bits (236), Expect = 1e-49 Identities = 547/821 (67%), Gaps = 20/821 (2%) Strand=Plus/Plus Query 551781 GCTACTAGTGGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGT--ATCAT 551838 |||||| ||| ||| |||| | ||||| |||||||| ||||| | |||| | || Sbjct 176240 GCTACTGCTGGTGATACTCACTTGGGTGGTGAAGATTTCGATAACCGCTTGGTTAACCAC 176299 Query 551839 GGTGTGTTGAAGATTTTAAACGAAAAAACAA--AGTTGATCTATCTACATCTGCCAAAGC 551896 | ||||||||| || || || || ||||| || || || | || ||| || Sbjct 176300 --TTTGTTGAAGAATTCAAGCGCAAGAACAAGAAGGACAT-TACCAGCAA-TGCTCGTGC 176355 Query 551897 TCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCA 551956 |||||||||||| | |||||||||||| | || || || | | || |||| |||||| Sbjct 176356 TCTTCGTCGTCTTCGCACTGCTTGCGAACGCGCTAAGCGTACCTTGTCTTCTGCTACTCA 176415 Query 551957 AACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAG 552016 | | | ||||| | ||||| || || || || || || | | | || | ||||| | Sbjct 176416 AGCTTCCGTTGAAATCGATTCCTTGTTCGATGGTATGGACTTTTACACTTCCATTTCTCG 176475 Query 552017 GGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACA 552076 || |||||||| |||| || | || | || ||||| || || ||| | Sbjct 176476 TGCTCGCTTTGAAGAACTTTGCATGGACTTGTTCCGTGCCACCATTGACCCCGTTGAAAA 176535 Query 552077 AGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGG 552136 || || | ||||| ||||||||||| ||| || | |||||||| | || ||||| Sbjct 176536 GGTCTTGCGTGATTCCAAGATTGATAAGAGCAAGGTTGACGAAATTGTCTTGGTCGGTGG 176595 Query 552137 ATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCT---TATTTCAATGGTAAAAA 552193 || || | ||||| || ||| ||| ||| | | || | ||||| || || | Sbjct 176596 TTCCACTCGTATTCCCAAGGTTC---AAAAGTTGATTACTGACTTCTTCAACGGAAAGGA 176652 Query 552194 ATTAAATGAAAG--TGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCA 552251 | || ||| | | || || |||||||||||||| || ||||| || ||||||| Sbjct 176653 A--CCCTGCAAGTCTATCAACCCTGATGAGGCTGTTGCTTACGGTGCTGCCGTTCAAGCT 176710 Query 552252 GCTATTCTTTCTGG-ACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTAC 552310 || || |||||||| | | | || ||| || || | | || | || ||| | Sbjct 176711 GCCATCCTTTCTGGTGTCAGCAGCAAGAAGACT-GAAGATTTGTTGCTCTTGGACGTTGC 176769 Query 552311 TCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAA 552370 ||| | ||| | ||| | ||||| | ||| ||| | |||||| | | || | || Sbjct 176770 TCCCTTGTCTTTGGGTATTGAAACTGCTGGTGGTGTCATGACTGCTTTGATTCCCCGTAA 176829 Query 552371 TACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGC 552430 |||||| ||||| ||| |||| | || ||||| || | ||||| ||| ||| Sbjct 176830 TACTACCATTCCCACTAAGCGTTCTCAAATCTTCTCTACTTACGCTGATAACCAACCTGG 176889 Query 552431 TGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGG 552490 ||| |||||| |||||||||| ||| | | || || || ||||| || || || Sbjct 176890 TGTCTTGATTCAAGTTTTTGAAGGTGAACGTACTTTGACCAAGGATAACAACTTGCTCGG 176949 Query 552491 TACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTAC 552550 || || | | || ||||| || |||||||| || || || ||||||||||| || Sbjct 176950 TAAATTCGAGCTTTCTGGAATTCCCCCGGCTCCTCGCGGTGTTCCTCAAATTGAAGTCAC 177009 Query 552551 TTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTT 552591 |||||| | |||| ||||| |||||||| || | |||| Sbjct 177010 TTTCGACGTTGATGAAAATGGTATTTTGAAGGTTTCCGCTT 177050 Score = 205 bits (226), Expect = 7e-47 Identities = 412/602 (68%), Gaps = 17/602 (3%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 ||| | ||||| ||||| || || || || ||| |||||| ||| |||| | Sbjct 175595 GCTGTTGGTATTGATTTGGGTACTACTTACTCTTGCGTTGGTTACTGGACTAATGATCGT 175654 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 |||||||| ||||| || || ||||||||| | |||||||| |||||||| | ||||| Sbjct 175655 GTTGAAATCATTGCTAACGACCAAGGTAACCGCACTACTCCCTCTTATGTCGCCTTCACT 175714 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 |||||||| | ||| |||||||||| || || | |||| | | || || ||| Sbjct 175715 GAAACTGAGCGCTTAATTGGTGATGCTGCTAAGAACCAAGTCGCCATGAACCCCTTCAAC 175774 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 ||| | || |||||||| ||||| ||||| | |||| | || | || || | Sbjct 175775 ACTGTCTTCGATGCTAAGCGTTTGATTGGTCGTCGTTTCACCGACAAGGAAGTCCAAGAC 175834 Query 550232 GATATGAAGCATTGGCCTTTCCAA---ATTGTTAATGTTTCTGGAAAACCTTATATTGAA 550288 || |||||||| ||||| ||| | |||| | | | || || ||| || Sbjct 175835 GACATGAAGCACTGGCCCTTCAAGGTCATTGACCAAGACACC---AAGCCCGTCATTCAA 175891 Query 550289 GCT-ACTCATGAAGGATCTGTTAAACAATTTTCAC--CAGAACAAATTTCATCTATGGTT 550345 | | | | |||| | | ||| | | ||||| | ||| |||| || || ||||| Sbjct 175892 ATTGAAT--TCAAGGGTGAGCAAAA-AGTGTTCACTCCTGAAGAAATCTCTTCCATGGTC 175948 Query 550346 TTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTC-AAGAAGTTACGGATGCAGT 550404 || |||| ||||| ||||| || ||||| ||| | ||||||| | | |||| || Sbjct 175949 TTGTTGAAGATGAAGCAAACTGCTGAAGCTTTC-TTGAACGAAGAAGTCAAGAATGCCGT 176007 Query 550405 AATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACG 550464 | || || || || || || |||||||| |||||||||||||| || ||||||||| Sbjct 176008 CGTCACCGTCCCTGCCTACTTCAATGACTCTCAACGTCAAGCTACCAAGGATGCTGGAGC 176067 Query 550465 TATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATA 550524 ||||| || | || ||||| || || || || ||||| ||||||||||| |||| || Sbjct 176068 CATTGCCGGTTTGAACGTTCTCCGCATCATTAACGAACCCACTGCTGCTGCCATTGCTTA 176127 Query 550525 TGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATT---GTGGAGG 550581 ||| | ||||| | | | |||| ||||| |||||||| |||| |||| || Sbjct 176128 CGGATTGGATAAGAGCTGTACTGACGAACGCAATGTCCTCATCTTCGATTTGGGTGGTGG 176187 Query 550582 TA 550583 || Sbjct 176188 TA 176189 >seq590 Length=245030 Score = 150 bits (166), Expect = 1e-30 Identities = 368/551 (67%), Gaps = 19/551 (3%) Strand=Plus/Plus Query 549994 TATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGT-TTGGCAAA--ATGGTAA 550050 ||| ||||| || || || || || | |||||||||| |||| | | ||||| Sbjct 143391 TATCGGTATTGACTTGGGTACTACCTTCTCTTGTGTTGGTTACTTGGGAGACAATGGT-- 143448 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 || |||| | | ||||| |||||||| | | || || |||| || || | || Sbjct 143449 -GTGCAAATCTTCTCTAATGACCAAGGTAATCGTATCACCCCCTCTTGGGTAGCTATGAC 143507 Query 550111 GGAAACTG---AACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTAC 550167 | | || || |||||||| || || || || |||||||| ||| ||| || || Sbjct 143508 TGCCAATGGTGAATGGTTAGTTGGCGAAGCTGCCAAGAATCAAGCCTCTGCTAACCCGAC 143567 Query 550168 CAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCA 550227 |||||| | ||||||||||| ||||| ||||| | | || |||| | | || | Sbjct 143568 TAATACTGTCTTTGATGCTAAGCGTTTGATTGGTCGTAAGATTGATGAAGCTTCCGTCAA 143627 Query 550228 GGCAGATATGAAGCATTGGCCTTTCCAAATTGTT---AATGTTTCTGGAAAACCTTATAT 550284 || || ||||| | |||||||||| | ||||| || | | ||||| ||||| || Sbjct 143628 GGATGACATGAAACTTTGGCCTTTCAAGGTTGTTGGCAAGGGT---GGAAACCCTTACAT 143684 Query 550285 TGAA--GCTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATG 550342 | || ||| | || | ||| | ||| | || ||||||||||| | ||| Sbjct 143685 TCGTTTGCGTGTCAAGGGCGAG--GATAAGGACTTTGCTCCTGAACAAATTTCTGCCATG 143742 Query 550343 GTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCA 550402 ||||| | || ||||| ||| || ||| | | |||| |||| | | || Sbjct 143743 GTTTTGAGTAAGATGAAGGAAATTGCTGAGGCTGCTTTGGGTCGTAAAGTGAACAAGGCT 143802 Query 550403 GTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGA 550462 || | ||||| || || || || ||||| | |||||||||||||| || |||||||| Sbjct 143803 GTCGTGACTGTCCCTGCTTACTTCAATGATGCTCAACGTCAAGCTACCAAGGATGCTGGT 143862 Query 550463 CGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCA 550522 ||||||| | | ||| ||||| | |||||||||| ||||||||||| | || Sbjct 143863 GTTATTGCTAATTTGGAAGTTGTTCGTGTCCTCAATGAACCGACTGCTGCTGCTATCGCT 143922 Query 550523 TATGGACTTGA 550533 || || ||||| Sbjct 143923 TACGGTCTTGA 143933 >seq1543 Length=144401 Score = 145 bits (160), Expect = 6e-29 Identities = 246/354 (69%), Gaps = 2/354 (1%) Strand=Plus/Plus Query 344257 TTATCTCCCACCATTTGTTTGAGACGTTGATAATATGTTGGACCAATGAATATTTTAACT 344316 ||||| | ||||| ||||| | |||||||||||| ||||| |||| ||| |||| | || Sbjct 15604 TTATCATCGACCATGTGTTTTAAACGTTGATAATACGTTGGTCCAAGGAAGATTTGAGCT 15663 Query 344317 TCCATTCTTTGTCCCGTCATTCCATTATACATTGTTTCATTTCCCCATGCTTCATGTCCT 344376 ||| | | |||| || ||||| ||||| ||| ||| | | | || ||| Sbjct 15664 GCCAATTTGCGTCCAGTGTGACCATTGTACATGACTTCCAATCCTCGTTGCTGATATCCA 15723 Query 344377 AAAGCTACTAAATCATCATTAATTTTATTAATATTAACTCCTGTAAATGGAGTTGCATCT 344436 |||| | ||| | | | |||| | || | || | ||||| || || ||||| Sbjct 15724 CAAGCAGCCAAAGCCTGAGAAATTGCTTCAACTGTGACGTCAGTAAAGGGTGTAGCATCA 15783 Query 344437 CCAT-ATACCCCTTTAATTGCACAAACTTTACCTAGTAAACATTCAATTAATTGACCTAT 344495 || | || ||| |||| |||| |||||||| | ||||||||||| ||| ||||| || Sbjct 15784 CCTTCATCCCCAGTTAAA-GCACTCACTTTACCCAATAAACATTCAACTAAATGACCAAT 15842 Query 344496 CGTCATACGTTTGGGCATACAATTAGGATTAATAATAATATCAGGAATTAATCCTGATTT 344555 ||||||||| || || || ||||||||| ||||| || || |||| ||| Sbjct 15843 TGTCATACGTGAAGGAATTGCATGAGGATTAATGATAATGTCCGGGGTTAAACCTTCCGC 15902 Query 344556 TGTGAATGGAAGATCTGCACGATGAATTTTAAATCCAACTGTTCCTTTTTGTCC 344609 |||||||| | |||| ||| | || | | |||||||||||||||||| || Sbjct 15903 GGTGAATGGCATATCTTCACTACGATAAGTTATTCCAACTGTTCCTTTTTGACC 15956 >seq763 Length=1375 Score = 118 bits (130), Expect = 9e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 550382 GGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGT 550441 ||| ||||||| || || || || || ||||||||||| || ||||| ||| |||||| Sbjct 72 GGTGAAGAAGTCACTGAAGCCGTCATTACTGTACCAGCTTACTTTAACGACAGCCAACGT 131 Query 550442 CAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAA 550501 ||||| ||||||||||| || ||||| ||||| | | || ||||| || || ||| Sbjct 132 CAAGCCACTAAAGATGCAGGCCGTATCGCTGGTTTAGAAGTGAAACGTATCATTAACGAA 191 Query 550502 CCTACTGCTGCTGCACTTGCATATGGACTTGATAAACA 550539 || || |||||||| ||||| | ||| | |||||||| Sbjct 192 CCAACCGCTGCTGCGCTTGCTTTTGGTATGGATAAACA 229 >seq1630 Length=98064 Score = 104 bits (114), Expect = 2e-16 Identities = 226/337 (67%), Gaps = 6/337 (2%) Strand=Plus/Plus Query 368610 TTGGGGAACTCCAATTCCAGTATGGAAATCTGATGATGGTGAAGAAATTGTTTGTATAGG 368669 |||||| ||||||||||| | ||| ||| ||| | |||||| |||| || || Sbjct 34933 TTGGGGTACTCCAATTCCTCTTTGGGCTAATGAAGATTTTTCCGAAATTATTTGCATTGG 34992 Query 368670 TTCAATTAAAGAATTGCAAGAATTATCTGGTGTGCAAAATATTAGTGATTTACATATTGA 368729 |||||| | ||| | || || | ||||| | ||||| || || ||| ||| Sbjct 34993 ATCAATTGAGGAACTTGAACGCTTGACCGGTGTTTCAGGTATTAAAGACTTGCATCGTGA 35052 Query 368730 TAAAATTGATCACATTAAAATTCCATCAAAGAAAGGAAAAGGTTTATTGTCTCGAGTTGA 368789 | |||||||| | | ||||| ||| | ||||| || | ||| ||| ||||| Sbjct 35053 AAGCATTGATCATTTGACTATTCCTTCACGTGATGGAAAGGGCGTTTTGCGTCGTGTTGA 35112 Query 368790 AGGAGTTTTGGATTGCTGGTTTGAATCAGGTTCTATGCCTTATGGTCAAATACATTATCC 368849 || |||| ||||||| ||||||||| || | | ||||||| ||| | |||||||| Sbjct 35113 AGAAGTTCTGGATTGTTGGTTTGAAAGTGGAAGTGTCCCTTATGCTCAGCTTCATTATCC 35172 Query 368850 ATTTGATAACGCAAAATACTTTGATAATGATAAAGATTATGTGGCTGATTTTGTAACAGA 368909 |||||| ||| || | ||||| | ||| || | ||||| | ||| Sbjct 35173 ATTTGAAAACAAGGAAAAGTTTGA-----AGCAAGCTT-CCCGTACGATTTCATTGGAGA 35226 Query 368910 ATCAATTGATCAAACACGTGGTTGGTTTTATACCCTA 368946 | | |||||||| ||||| ||||||||||||||| Sbjct 35227 AGGTTTGGATCAAACTCGTGGCTGGTTTTATACCCTA 35263 >seq100 Length=112360 Score = 95.1 bits (104), Expect = 1e-13 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 550406 ATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGT 550465 ||||| ||||||||||| |||||||| || ||| | | || || ||||||||||| | Sbjct 6160 ATAACAGTACCAGCATACTTTAATGATTCGCAAAGACTCGCAACCCAAGATGCTGGAAGA 6101 Query 550466 ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATAT 550525 ||||| || ||| | ||||| || ||| | ||||||||||| || || || | || ||| Sbjct 6100 ATTGCAGGTCTTGAAGTTCTACGAATTTTAAATGAACCTACCGCAGCGGCCTTAGCTTAT 6041 Query 550526 GG 550527 || Sbjct 6040 GG 6039 Score = 95.1 bits (104), Expect = 1e-13 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 550406 ATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGT 550465 ||||| ||||||||||| |||||||| || ||| | | || || ||||||||||| | Sbjct 13020 ATAACAGTACCAGCATACTTTAATGATTCGCAAAGACTCGCAACCCAAGATGCTGGAAGA 13079 Query 550466 ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATAT 550525 ||||| || ||| | ||||| || ||| | ||||||||||| || || || | || ||| Sbjct 13080 ATTGCAGGTCTTGAAGTTCTACGAATTTTAAATGAACCTACCGCAGCGGCCTTAGCTTAT 13139 Query 550526 GG 550527 || Sbjct 13140 GG 13141 >seq1422 Length=277306 Score = 91.5 bits (100), Expect = 1e-12 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 563259 ACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGA 563318 ||| ||||| || || || ||| || || ||||||||| ||||| | ||| | Sbjct 271538 ACGAAGTACCAGGTGGAGCGTAGACTCCTTCTGAATATTGTAGTCAGCCAAAGTACGACC 271479 Query 563319 ATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTT 563378 || || || || || || ||||| || || | ||||||||||| ||||| ||||| || Sbjct 271478 GTCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGTGGAATGCCTTCCTT 271419 Query 563379 ATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAA 563437 || || || ||||| ||||| || || | ||| | | | | || || || |||| Sbjct 271418 GTCCTGGATCTTTTGCTTTACATTGTCGATCGAATCCGAG-GGCTCCACGTCCAGCGTAA 271360 Query 563438 CAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || |||||||| | ||| || || ||||||||||| Sbjct 271359 TCGTCTTACCAGTCAAAGTCTTTACAAAAATTTGCAT 271323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029181505035850