Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq100 542 8e-150 >seq100 Length=112360 Score = 542 bits (600), Expect = 8e-150 Identities = 713/983 (73%), Gaps = 4/983 (0%) Strand=Plus/Plus Query 25793 TGGGAGAGGTTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTC 25852 ||||| || || ||| ||| |||| ||| || ||| | | || | ||||||||| Sbjct 40143 TGGGAAAGATTCTGTTCTTGGATTACTAGTTTAGAAAACAGATTATACATTGGATGGTTC 40202 Query 25853 GGGGTGCTTATGATACCCT-GCTTACTCGCAGCCACTACATGTTTTATACTTGCCTTCAT 25911 || || | ||||| || |||| | |||| ||||||||||| || | | || || Sbjct 40203 GGAGTTGTGATGATTCCTACGCTTT-TAACAGCTACTACATGTTTCATTATCGGTTTTAT 40261 Query 25912 CGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTA 25971 |||||| || || ||||| || ||||| || || |||||||| | || || || | || Sbjct 40262 CGCAGCTCCTCCAGTAGACATTGATGGAATTCGCGAGCCAGTAGCTGGATCCCTATTATA 40321 Query 25972 CGGAAACAATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTT 26031 |||||||| || || ||||| || | | || || |||||||| || | ||||| Sbjct 40322 TGGAAACAACATTATTACAGGATCAATTATTCCTAGTTCAAACGCAATTGGTGTTCATTT 40381 Query 26032 TTACCCGATCTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCA 26091 ||| || || |||||||||| | | || || ||| |||| || || || |||||||| Sbjct 40382 TTATCCTATATGGGAAGCTGCTTCTATTGATGAATGGTTATATAACGGTGGTCCATATCA 40441 Query 26092 ACTCATTATCTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACT 26151 ||| || | || |||||||||| ||| ||||| ||| ||| | |||||||| | Sbjct 40442 ACTGATAGTATTACACTTCTTAACAGGTGTAGCTTGTTATTTAGGTCGTGAGTGGGAATT 40501 Query 26152 -ATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCG 26210 | ||| | | |||||||| | || ||||| |||||||| | | | || ||| || | | Sbjct 40502 AAGCTTTC-GCTTAGGAATGCGCCCTTGGATTTTTGTTGCCTTTTCCGCTCCAGTAGCTG 40560 Query 26211 CAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGC 26270 |||| || || |||||| ||||||| | |||||||| |||||| |||||| |||| Sbjct 40561 CAGCAACAGCTGTATTCTTAATTTATCCGATAGGACAAGGAAGTTTTTCTGATGGTATGC 40620 Query 26271 CTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATAC 26330 || | || || || || ||||||||||| ||||| || |||||||| || ||||| ||| Sbjct 40621 CTTTAGGGATTTCAGGGACTTTTAACTTCATGTTAGTTTTCCAAGCCGAGCATAACATAT 40680 Query 26331 TCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTG 26390 | ||||| ||||| || ||||||||||| ||||| ||||| || || | | || ||| Sbjct 40681 TAATGCATCCATTTCACATGGCTGGTGTAGCTGGAGTTTTTGGAGGTTCATTATTTTCTG 40740 Query 26391 CTATGCACGGAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCAC 26450 | ||||||||| ||| || ||||| ||| ||||| ||||| | || | |||| Sbjct 40741 CAATGCACGGATCTTTAGTAACTTCATCAATTATTCGTGAAACTTCTGAAAGCGAATCAC 40800 Query 26451 AGAATTATGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACG 26510 |||||||| || || ||||| ||||| ||||| |||||||||||||| ||||| |||| Sbjct 40801 CAAATTATGGATACAAATTTGGACAAGAAGAAGAAACATATAATATTGTTGCTGCTCACG 40860 Query 26511 GGTACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATT 26570 | || || || |||||||||||||| || || |||||||||||| ||||| | || | Sbjct 40861 GATATTTCGGAAGATTAATTTTTCAATACGCAAGTTTTAATAACTCACGTTCATTACACT 40920 Query 26571 TCTTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAA 26630 |||| | ||| | ||||| || ||||| || ||| | || | | || || | |||| Sbjct 40921 TCTTCTTAGCTGCATGGCCAGTAGTTGGAATTTGGTTAACTGCATTAGGAATTAGTACAA 40980 Query 26631 TGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGA 26690 |||| |||||| |||| || ||||||||||| || || | | ||| | |||| Sbjct 40981 TGGCCTTTAACTTAAACGGATTTAACTTTAATCAATCGATTATTGATAGCCAAGGAAGAG 41040 Query 26691 TAATACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACG 26750 |||| || ||||| ||| | ||||| |||| || || || | ||||| ||||| | Sbjct 41041 TAATTAACACTTGGGCAGATATTGTAAACAGAGCAAATCTTGGAATCGAAGTAATGCATG 41100 Query 26751 AGCGTAATGCTCATAACTTTCCA 26773 | ||||||||||||||||| ||| Sbjct 41101 AACGTAATGCTCATAACTTCCCA 41123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146722627755960