Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq100 489 5e-134 >seq100 Length=112360 Score = 489 bits (542), Expect = 5e-134 Identities = 707/996 (71%), Gaps = 6/996 (1%) Strand=Plus/Minus Query 35973 GCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 36032 || || || | ||||||||| || || ||||| |||||||| ||||| || || | | Sbjct 41134 GCAAGATCTAATGGGAAGTTATGAGCATTACGTTCATGCATTACTTCGATTCCAAGATTT 41075 Query 36033 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 36092 || | ||| | ||| || |||||||| | |||||||| | | ||||| | || Sbjct 41074 GCTCTGTTTACAATATCTGCCCAAGTGTTAATTACTCTTCCTTGGCTATCAATAATCGAT 41015 Query 36093 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 36152 ||||| |||||||| ||||| | ||||| ||||| || | ||| | || || | | Sbjct 41014 TGATTAAAGTTAAATCCGTTTAAGTTAAAGGCCATTGTACTAATTCCTAATGCAGTTAAC 40955 Query 36153 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAG 36212 || || | | || ||||| ||||| | |||||| ||||| || |||||||| Sbjct 40954 CAAATTCCAACTACTGGCCATGCAGCTAAGAAGAAGTGTAATGAACGTGAGTTATTAAAA 40895 Query 36213 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 36272 || || || || || || | ||| || || || || ||||| |||||||| ||||| || Sbjct 40894 CTTGCGTATTGAAAAATTAATCTTCCGAAATATCCGTGAGCAGCAACAATATTATATGTT 40835 Query 36273 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 36332 ||||||||||| || ||||| |||||||| || | ||||| ||| ||||||||| Sbjct 40834 TCTTCTTCTTGTCCAAATTTGTATCCATAATTTGGTGATTCGCTTTCAGAAGTTTCACGA 40775 Query 36333 ATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACC 36392 |||| ||| ||||| || | | ||||||||| |||| ||||| | || || || || Sbjct 40774 ATAATTGATGAAGTTACTAAAGATCCGTGCATTGCAGAAAATAATGAACCTCCAAAAACT 40715 Query 36393 CCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACA 36452 || || ||||| ||| || || |||||||| | || || || || || || || || Sbjct 40714 CCAGCTACACCAGCCATGTGAAATGGATGCATTAATATGTTATGCTCGGCTTGGAAAACT 40655 Query 36453 AACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGT 36512 ||||| || || |||||||||||||| || | ||||||||||||||| ||||| |||||| Sbjct 40654 AACATGAAGTTAAAAGTCCCTGAAATCCCTAAAGGCATACCATCAGAAAAACTTCCTTGT 40595 Query 36513 CCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACA 36572 || | || || | |||||||||||| |||||| || || || || ||| | || ||| Sbjct 40594 CCTATCGGATAAATTAAGAATACAGCTGTTGCTGCAGCTACTGGAGCGGAAAAGGCAACA 40535 Query 36573 CATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCT 36632 | ||||| || | ||| |||| | | | || | |||||| | || || || ||| Sbjct 40534 AAAATCCAAGGGCGCATTCCTAAGCGAAAGCTTAATTCCCACTCACGACCTAAATAACAA 40475 Query 36633 GAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCAC 36692 | | ||| | | ||||| || || || ||||||||||| || |||||||||||||| Sbjct 40474 GCTACACCTGTTAAGAAGTGTAATACTATCAGTTGATATGGACCACCGTTATATAACCAT 40415 Query 36693 TCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGAT 36752 || || | | ||||||||||| || || || || |||| ||| |||||||| || Sbjct 40414 TCATCAATAGAAGCAGCTTCCCATATAGGATAAAAATGAACACCAATTGCGTTTGAACTA 40355 Query 36753 GGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCA 36812 || | |||| || | || |||||||||||||| | || | ||| | || ||||| Sbjct 40354 GGAATAATTGATCCTGTAATAATGTTGTTTCCATATAATAGGGATCCAGCTACTGGCTCG 40295 Query 36813 CGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGC---AATTAAAAATGCTGTC 36869 ||||| ||||| || || || ||||| || || | ||| | ||| ||| ||| || Sbjct 40294 CGAATTCCATCAATGTCTACTGGAGGAGCTGCGATAAAACCGATAATGAAACATGTAGTA 40235 Query 36870 ACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTG 36929 ||||||||||| | ||| ||||| | || || ||||| || | || | | ||| Sbjct 40234 ---GCTGTTAAAAGCGTAGGAATCATCACAACTCCGAACCATCCAATGTATAATCTGTTT 40178 Query 36930 TTTGTACTTGTAACCCAGTCACATAAACTTTCCCAG 36965 | | ||| |||| ||| ||| || ||||||||| Sbjct 40177 TCTAAACTAGTAATCCAAGAACAGAATCTTTCCCAG 40142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150450531911410