Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq100 459 8e-125 >seq100 Length=112360 Score = 459 bits (508), Expect = 8e-125 Identities = 702/997 (70%), Gaps = 10/997 (1%) Strand=Plus/Minus Query 5195 GCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTG 5254 || ||||| | ||||||||| |||||||| ||||| ||||||||||| || ||||| || Sbjct 41134 GCAAGATCTAATGGGAAGTTATGAGCATTACGTTCATGCATTACTTCGATTCCAAGATTT 41075 Query 5255 GCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACC---GCTAGAGTCAACGACT 5311 || | ||| | | ||||||||||||| || | ||| || |||| |||| | Sbjct 41074 GCTCTGTTTACAATATCTGCCCAAGTGTTAATTACTCTTCCTTGGCTA---TCAATAATC 41018 Query 5312 GACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTA 5371 || ||||| |||||||| ||||| | ||||| ||||| || ||||| | | || Sbjct 41017 GATTGATTAAAGTTAAATCCGTTTAAGTTAAAGGCCATTGTACTAATTCCTAATGCAGTT 40958 Query 5372 AGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTA 5431 | ||| || | ||| || ||||| | ||| | |||||| ||||| ||| || ||| Sbjct 40957 AACCAAATTCCAACTACTGGCCATGCAGCTAAGAAGAAGTGTAATGAACGTGAGTTATTA 40898 Query 5432 AAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATAC 5491 || || || || || || || | ||| || || || || ||||| |||||||| ||||| Sbjct 40897 AAACTTGCGTATTGAAAAATTAATCTTCCGAAATATCCGTGAGCAGCAACAATATTATAT 40838 Query 5492 GTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCC--CAGTTGTTT 5549 |||||||| ||||| || ||||| |||||||| || | || | || ||| |||| Sbjct 40837 GTTTCTTCTTCTTGTCCAAATTTGTATCCATAATTTGGTGA--TTCGCTTTCAGAAGTTT 40780 Query 5550 CACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGA 5609 ||||||| | || ||||| || | | ||| ||||| |||| || || | || || | Sbjct 40779 CACGAATAATTGATGAAGTTACTAAAGATCCGTGCATTGCAGAAAATAATGAACCTCCAA 40720 Query 5610 ATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGA 5669 | || ||||| ||||| |||||| || |||||||| | || || || || || |||| Sbjct 40719 AAACTCCAGCTACACCAGCCATGTGAAATGGATGCATTAATATGTTATGCTCGGCTTGGA 40660 Query 5670 ATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTC 5729 | || ||||| ||||||||||| || || || || | ||||||||||||| ||||||| Sbjct 40659 AAACTAACATGAAGTTAAAAGTCCCTGAAATCCCTAAAGGCATACCATCAGAAAAACTTC 40600 Query 5730 CCTGTCCGAAAGGGTATACTAAAAATACTGAGTAGGCTGCGGCAACCGGTGCTGAATATG 5789 | ||||| | || || | ||| ||||| | ||||| || || || || ||| | | Sbjct 40599 CTTGTCCTATCGGATAAATTAAGAATACAGCTGTTGCTGCAGCTACTGGAGCGGAAAAGG 40540 Query 5790 CTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGT 5849 | || ||||||| || ||||||||||| | | || | |||||| | || || || | Sbjct 40539 CAACAAAAATCCAAGGGCGCATTCCTAAGCGAAAGCTTAATTCCCACTCACGACCTAAAT 40480 Query 5850 AAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAA 5909 || || | ||| | | |||||| || || | ||||| ||||| || || || || | Sbjct 40479 AACAAGCTACACCTGTTAAGAAGTGTAATACTATCAGTTGATATGGACCACCGTTATATA 40420 Query 5910 GCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGG 5969 ||||||||| | | || |||||||| || ||||| || || | ||||||||||| | Sbjct 40419 ACCATTCATCAATAGAAGCAGCTTCCCATATAGGATAAAAATGAACACCAATTGCGTTTG 40360 Query 5970 AGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGG 6029 | || || | || | ||||| || |||||||||||||| | ||| ||||| || || | Sbjct 40359 AACTAGGAATAATTGATCCTGTAATAATGTTGTTTCCATATAATAGGGATCCAGCTACTG 40300 Query 6030 GTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAG 6089 | || || || || || ||||| ||||| || || || | || | | || || | Sbjct 40299 GCTCGCGAATTCCATCAATGTCTACTGGAGGAGCTGCGATAAAACCGATAATGAAACATG 40240 Query 6090 TAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGT 6149 |||| || ||||| || | || ||||| | || || ||||| || | || | | || Sbjct 40239 TAGTAGCTGTTAAAAGCGTAGGAATCATCACAACTCCGAACCATCCAATGTATAATCTGT 40180 Query 6150 TGTTGGTGCTAGTAACCCAGTCACAGAACTTATCCCA 6186 | | ||||||| ||| |||||| | ||||| Sbjct 40179 TTTCTAAACTAGTAATCCAAGAACAGAATCTTTCCCA 40143 Score = 84.2 bits (92), Expect = 7e-12 Identities = 119/161 (74%), Gaps = 10/161 (6%) Strand=Plus/Plus Query 5195 GCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTG 5254 || ||||| | ||| ||||| |||||||| ||||| ||||||||||| || ||||| || Sbjct 112200 GCAAGATCTAATGG-AAGTTATGAGCATTACGTTCATGCATTACTTCGATTCCAAGATTT 112258 Query 5255 GCACGGTTCA-GGACATCT-GCCCAAGTGGGAACGATTCTACC---GCTAGAGTCAACGA 5309 || | ||| | | |||| ||||||||| || | ||| || |||| |||| | Sbjct 112259 GCTCTGTTTACATATATCTGGCCCAAGTGTTAATTACTCTTCCTTGGCTA---TCAATAA 112315 Query 5310 CTGACTGATTGAAGTTAAAGCCG-TTAAGATTAAAAGCCAT 5349 || ||||| |||||||| ||| ||||| | ||| ||||| Sbjct 112316 TCGATTGATTAAAGTTAAATCCGTTTAAGTTAAAAGGCCAT 112356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152645675474190