Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq100 491 1e-134 >seq100 Length=112360 Score = 491 bits (544), Expect = 1e-134 Identities = 700/984 (71%), Gaps = 6/984 (1%) Strand=Plus/Minus Query 25465 GGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCGGCACGGTTAAGA 25524 |||||||| || || ||||| |||||||| ||||| || || | | || | ||| | | Sbjct 41122 GGGAAGTTATGAGCATTACGTTCATGCATTACTTCGATTCCAAGATTTGCTCTGTTTACA 41063 Query 25525 ATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGACTGATTGAAGTTA 25584 || || |||||||| | |||||||| | | ||||| | || ||||| |||||| Sbjct 41062 ATATCTGCCCAAGTGTTAATTACTCTTCCTTGGCTATCAATAATCGATTGATTAAAGTTA 41003 Query 25585 AAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGCCATATGCAAGTG 25644 || ||||| | ||||| ||||| || | ||| | || || | ||| || | | Sbjct 41002 AATCCGTTTAAGTTAAAGGCCATTGTACTAATTCCTAATGCAGTTAACCAAATTCCAACT 40943 Query 25645 ACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAGCTAGCATACTGG 25704 || ||||| ||||| | |||||| ||||| ||| |||||||| || || || || Sbjct 40942 ACTGGCCATGCAGCTAAGAAGAAGTGTAATGAACGTGAGTTATTAAAACTTGCGTATTGA 40883 Query 25705 AAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGG 25764 || || | ||| || || || || ||||| |||||||| ||||| || ||||||||||| Sbjct 40882 AAAATTAATCTTCCGAAATATCCGTGAGCAGCAACAATATTATATGTTTCTTCTTCTTGT 40823 Query 25765 CCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAA 25824 || ||||| |||||||| || | ||||| ||| ||||||||||||| ||| ||| Sbjct 40822 CCAAATTTGTATCCATAATTTGGTGATTCGCTTTCAGAAGTTTCACGAATAATTGATGAA 40763 Query 25825 GTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCG 25884 || || | | ||||||||| |||| ||||| | || || || || || || ||||| Sbjct 40762 GTTACTAAAGATCCGTGCATTGCAGAAAATAATGAACCTCCAAAAACTCCAGCTACACCA 40703 Query 25885 AGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTG 25944 ||| || || |||||||| | || || || || || || || || ||||| || || Sbjct 40702 GCCATGTGAAATGGATGCATTAATATGTTATGCTCGGCTTGGAAAACTAACATGAAGTTA 40643 Query 25945 AAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAG 26004 |||||||||||||| || | ||||||||||||||| ||||| |||||||| | || || Sbjct 40642 AAAGTCCCTGAAATCCCTAAAGGCATACCATCAGAAAAACTTCCTTGTCCTATCGGATAA 40583 Query 26005 ACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGC 26064 | |||||||||||| |||||| || || || || ||| | || ||| | ||||| || Sbjct 40582 ATTAAGAATACAGCTGTTGCTGCAGCTACTGGAGCGGAAAAGGCAACAAAAATCCAAGGG 40523 Query 26065 CTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATGCCGATG 26124 | ||| |||| | | | || | |||||| | || || || ||| | | || | Sbjct 40522 CGCATTCCTAAGCGAAAGCTTAATTCCCACTCACGACCTAAATAACAAGCTACACCTGTT 40463 Query 26125 AGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTT 26184 | ||||| || || || ||||||||||| ||||||||||| ||||| || || | | Sbjct 40462 AAGAAGTGTAATACTATCAGTTGATATGGACCACCGTTATATAACCATTCATCAATAGAA 40403 Query 26185 GCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCC 26244 ||||||||||| || || || || |||| ||| |||||||| || || | |||| Sbjct 40402 GCAGCTTCCCATATAGGATAAAAATGAACACCAATTGCGTTTGAACTAGGAATAATTGAT 40343 Query 26245 CCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCT 26304 |||| || |||||||||||||| | || | ||| | || ||||| ||||| ||||| Sbjct 40342 CCTGTAATAATGTTGTTTCCATATAATAGGGATCCAGCTACTGGCTCGCGAATTCCATCA 40283 Query 26305 ATATCCACGGGAGGCGCAGCAACAAATGC---AATTAAAAATGCTGTCACTGCTGTTAAA 26361 || || || ||||| || || | ||| | ||| ||| ||| || ||||||||| Sbjct 40282 ATGTCTACTGGAGGAGCTGCGATAAAACCGATAATGAAACATGTAGT---AGCTGTTAAA 40226 Query 26362 AGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTA 26421 || | ||| ||||| | || || ||||| || | || | | ||| | | ||| ||| Sbjct 40225 AGCGTAGGAATCATCACAACTCCGAACCATCCAATGTATAATCTGTTTTCTAAACTAGTA 40166 Query 26422 ACCCAGTCACATAAACTTTCCCAG 26445 | ||| ||| || ||||||||| Sbjct 40165 ATCCAAGAACAGAATCTTTCCCAG 40142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151989692339540