Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq811 170 2e-37 seq1526 165 1e-35 seq368 100 3e-16 >seq811 Length=1194 Score = 170 bits (188), Expect = 2e-37 Identities = 229/316 (72%), Gaps = 7/316 (2%) Strand=Plus/Plus Query 37449 TAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAA 37508 ||||||||||||| |||| |||| |||| |||||| ||||| || ||||| ||| Sbjct 87 TAAGTATCAATTAATAAAGAATACGTTTCGCTGTGAATGTTTTCCATCATAATCTGGAAA 146 Query 37509 CCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTT 37568 ||||| ||| || | ||||||| ||||||| ||||| | ||| ||| ||| |||||| Sbjct 147 CCATAGAAAAACTTCGCTTCAGCATATTGAACTTCGTTTACAAAGTTCTCAGCCAAGTTT 206 Query 37569 TCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTT 37628 ||||| || || || ||| |||||||||||| || | || || ||| || |||| |||| Sbjct 207 TCATTTACGATTCCGTCAGAAGCTGCAAAGAATGCTAAAATATGTTTAATGAAATATCTT 266 Query 37629 TCA---TCATTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCA 37685 ||| ||||| | || |||||||| | | ||||| ||||| | ||| ||| Sbjct 267 TCATCGTCATTCAGTTTGTTATTCCAATCTGTCAAATCTTGGTGCAAATCGATTTCTTCA 326 Query 37686 ACGGTCCAAAAACTTGCCAATGCACGTTTATACATCGT--CCAAATATCATTATGTTGTA 37743 | ||||| ||||| || | || ||| || | | | ||||||||||| ||||| | Sbjct 327 GCAGTCCAGAAACTAGC--TTCCATTTTTTTATACCATTCCCAAATATCATGATGTTTGA 384 Query 37744 TTGGAAATATTACAAA 37759 | ||||| || || || Sbjct 385 TAGGAAAAATAACGAA 400 >seq1526 Length=132622 Score = 165 bits (182), Expect = 1e-35 Identities = 359/535 (67%), Gaps = 7/535 (1%) Strand=Plus/Plus Query 37167 AACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAA 37226 || || ||||| |||||||||||||| | |||||| || | || || | |||||| || Sbjct 118680 AATAACAAACAGGCAAAATCACAATGAAGACCTTCGTCACGGCTGATTAGTTCATTGGAG 118739 Query 37227 AAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCA 37286 ||||| || || ||||| || || | || || | ||| || || || ||||| || || Sbjct 118740 AAGGTCAAACCGGGCATCAACCCGCGCTTCTTCAACCAGAAAATGGCAGCAAATGAACCG 118799 Query 37287 GAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTA 37346 |||||||| |||||||| || || ||||| || ||||| ||| || ||| | | Sbjct 118800 GAAAAGAAGATACCTTCCACGGCAGCAAAAGCAACAAGGCGTTCTCCAAAACAGCTAGTT 118859 Query 37347 TAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCA 37406 | || |||||| | | ||| ||| |||| |||||| || || ||| Sbjct 118860 TGATTTTCAATCCAACGCATAGCCCAGTCTCCCTTCTTGCGAACACAAGGGATGGTGTCA 118919 Query 37407 ATTGCTTTTAAGAGAAAGtttttttCTTCACT--ATCTGTTATATAAGTATCAATTAGTA 37464 || || || || || || ||| || ||| || || || |||||||| || | Sbjct 118920 ATGGCATTGAAAAGGAA--TTTACGCTCAACTGGGTCACGAATGTAGGTATCAATGAGGA 118977 Query 37465 AACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAG 37524 | |||||||||| |||||| |||||||| || || || || ||||| || | || Sbjct 118978 GAGAGTACATTTCAGCGTGAATGTTTTCAATCATGATTTGGAACCCGTAAAAGCAACGAG 119037 Query 37525 CTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCAT 37584 |||| | | |||||| || | || | || | ||||||||||| || || |||| Sbjct 119038 CTTCTGGAACTTGAACTTCTTGTGCGAAACGAGTAACCAAGTTTTCATTGACAATACCAT 119097 Query 37585 CACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATT 37644 || || ||||||||||| | |||| | ||| || |||||| || | || | Sbjct 119098 CAGAGGCAGCAAAGAAAGCCAAAACACGAGAAACAAAGAATCGTTCATCGTTAGTCAACT 119157 Query 37645 TT---TTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 || | ||||| || || || || || | |||||||| || | ||||| || Sbjct 119158 TTTCGTCCCAATGTTTTATGTCCTTGGAAAGGTCAACTTCTTCGGCAGTCCAGAA 119212 >seq368 Length=262043 Score = 100 bits (110), Expect = 3e-16 Identities = 277/413 (67%), Gaps = 14/413 (3%) Strand=Plus/Plus Query 37218 TCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCA 37277 || || |||||| ||| || ||||||||||| | || || | |||||| || | ||| Sbjct 28329 TCGTTTGAAAAGCTTAGACCAGGCATTAAACCGCGCTTCTTGAGCCAAAAGATGGA-GCA 28387 Query 37278 AAA-GATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGT---GTACC 37333 || || ||||| || ||||| ||||||||||| ||||| || | ||| ||| | | Sbjct 28388 GAATGAGCCAGAGAAAAAAATGCCTTCAACTGCAGCAAAGGCCAAAAGCCGTTCTGGATA 28447 Query 37334 GAAAGTTGAACTATA-ATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACAC 37392 | ||| || | | ||| | ||| || | ||| | || ||| | || | Sbjct 28448 GGAAGA-GACCCGTGGATCGCA---CCACTTCAGAGCCCAGTGCGCTTTTTTGGTGACGC 28503 Query 37393 ATTCAATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCT-TCACTATCTGTTATATAA 37451 | || || || || || || ||| || || || || | ||| | ||||| Sbjct 28504 AAGGGATAGTCTCGATAGCACGTAGTAGATGGTCCTTCTCAATCGCG-TCTTTGATATAC 28562 Query 37452 GTATCAATTAGTAAACTA-TACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACC 37510 || ||||| | || | | |||| ||| ||||| ||||| || || || || ||||| || Sbjct 28563 GTGTCAATCAA-AAGCGAGTACACTTCCGAGTGTATATTCTCGATTGCGATTTGAAACCC 28621 Query 37511 ATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTC 37570 ||||| || | ||| || | | || || ||||| ||| || | |||| ||||| Sbjct 28622 GTAAAAGCAGCGAGCCTCTGGCACCTGCACTTCGTTGCTAAAATTCATGGCTAGATTTTC 28681 Query 37571 ATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAAT 37623 ||| || || || |||||||| ||||||||||| || |||| || || |||| Sbjct 28682 ATTCACGATGCCGTCACTAGCAGCAAAGAAAGCGAGCACATGCTTAATGAAAT 28734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592300770426600