Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_017981.1 Length=49981 Score E Sequences producing significant alignments: (Bits) Value seq1716 122 3e-23 >seq1716 Length=36447 Score = 122 bits (134), Expect = 3e-23 Identities = 212/308 (69%), Gaps = 9/308 (3%) Strand=Plus/Plus Query 25980 AATTTCAGTGGTGTAGCGCTCAACGCCGTCCTTTTCCCACTTGCGGGTTTTCAGTTGCCC 26039 |||||| ||| ||||||| || || || |||||||| ||||| |||| || | || Sbjct 11984 AATTTCTGTGCTGTAGCGGGTGACACCATCTTTTTCCCATTTGCGAGTTTGTAGGCGGCC 12043 Query 26040 CTCAATGTAAACCTGTGAACCTTTCTTCAGGTACTCGCCCGCGATCTCCGCTACCTTGCC 26099 ||||| ||||| | |||||| || ||||| ||||| ||||| || |||| || | Sbjct 12044 TTCAATATAAACGGGGCGACCTTTTTTGAGGTATTCGCCAGCGATTTCAGCTAGTTTCCG 12103 Query 26100 AAACAGCACGACGCGATGCCATTCTGTCACTTCTTTCTTTTCGCCGGTCTGCTTATCGTT 26159 ||| || | |||||||| || ||||| || | ||| | | |||| || Sbjct 12104 GTACATGACAATATTGTGCCATTCAGTTTTTTCTTGTTTCTGGCCAGATT---TATCTTT 12160 Query 26160 CCAGCTTTCTGAGGTCGCTACGGTAATGTTGGCGACTGCGCCGCCATTAGGCATGTAACG 26219 |||| |||| | ||| || | | | | |||||||||||| ||||||| |||||||| || Sbjct 12161 CCAGTTTTCGGTGGTGGCAATGCTGAAGTTGGCGACTGCTTCGCCATTTGGCATGTAGCG 12220 Query 26220 GATCTCTGGATCGTTCCCCAGGTTACCGACAAGGATTACTTTATTTACGCCGCGTGATGC 26279 | ||| || || || | ||||| | | |||||||| ||||| | ||| Sbjct 12221 TACCTCCGGGTCACGGCCTAAATTACCCATTAAAATTACTTTGTTTACAC------TTGC 12274 Query 26280 CATTATTT 26287 |||||||| Sbjct 12275 CATTATTT 12282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159813491189390