Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq1110 129 5e-25 seq1422 123 2e-23 >seq1110 Length=486086 Score = 129 bits (142), Expect = 5e-25 Identities = 142/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 101282 TTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATC 101341 ||||| || ||||| || || | | | | |||| || | |||||| || ||||| ||| Sbjct 256290 TTTTGAATGTTGTAGTCCGCAAGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAGATC 256231 Query 101342 AAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCT 101401 |||||||| || || |||||||||||||| || || || ||||| || |||||| | || Sbjct 256230 AAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTACATTGTCA 256171 Query 101402 ACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAAT 101461 | |||| |||| |||||| || || || | || ||||| || || || || ||||| Sbjct 256170 ATGCTGTCTGACGGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTCTTGACAAAA 256111 Query 101462 ATCTGCATG 101470 ||||||||| Sbjct 256110 ATCTGCATG 256102 >seq1422 Length=277306 Score = 123 bits (136), Expect = 2e-23 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | ||||| | || | || || ||||| || || || |||||||| || || Sbjct 271549 CCTCCGCGCAAACGAAGTACCAGGTGGAGCGTAGACTCCTTCTGAATATTGTAGTCAGCC 271490 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | || || | ||||| || ||||| |||| |||||| ||||| || ||| Sbjct 271489 AAAGTACGACCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGTGGA 271430 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| || || || || ||||| |||||| | || | | || || | ||||| Sbjct 271429 ATGCCTTCCTTGTCCTGGATCTTTTGCTTTACATTGTCGATCGAATCCGAGGGCTCCACG 271370 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCG 101478 || || || | ||| || || || ||||| |||||||| || |||||| | |||| Sbjct 271369 TCCAGCGTAATCGTCTTACCAGTCAAAGTCTTTACAAAAATTTGCATGCCTCCGCG 271314 Score = 120 bits (132), Expect = 2e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | ||||| | || | || || ||| | || || ||||||||||| || || Sbjct 271321 CCTCCGCGCAAACGAAGCACCAGGTGGAGCGTACACTCCTTCTGTATATTGTAGTCAGCC 271262 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | || || | ||||| || |||||||||| |||||| ||||| || ||| Sbjct 271261 AAAGTACGACCGTCCTCGAGCTGCTTGCCGGCAAATATCAGACGCTGCTGATCAGGTGGA 271202 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || || || || ||||| ||||| | || | | ||| || | |||||| Sbjct 271201 ATTCCTTCCTTGTCCTGGATCTTTTGCTTTACGTTATCGATCGAGTCCGAAGGTTCCACG 271142 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473 || | ||||| ||| || || || | ||| || || || || ||||| ||| Sbjct 271141 TCCAAAGTGATCGTCTTACCAGTCAGAGTCTTGACGAAAATTTGCATTGTT 271091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396267943822905