Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1422 147 2e-30 seq1775 107 1e-18 seq1355 98.7 8e-16 seq1177 95.1 9e-15 seq1110 91.5 1e-13 >seq1422 Length=277306 Score = 147 bits (162), Expect = 2e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||| || ||||| ||| || ||||||||||| |||| | | | ||| |||| || Sbjct 271531 ACCAGGTGGAGCGTAGACTCCTTCTGAATATTGTAGTCAGCCAAAGTACGACCGTCCTCG 271472 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| || ||||| ||||| ||||| ||||| | |||| ||| |||||||| Sbjct 271471 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGTGGAATGCCTTCCTTGTCCTGG 271412 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||||| |||||| | | || || || | |||||| |||| ||||||||| || Sbjct 271411 ATCTTTTGCTTTACATTGTCGATCGAATCCGAGGGCTCCACGTCCAGCGTAATCGTCTTA 271352 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| ||||||||||| ||||| Sbjct 271351 CCAGTCAAAGTCTTTACAAAAATTTGCAT 271323 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 48557 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTC 48616 ||||| || ||||| | ||| || || |||||||| |||| | | | ||| |||| || Sbjct 271304 CACCAGGTGGAGCGTACACTCCTTCTGTATATTGTAGTCAGCCAAAGTACGACCGTCCTC 271245 Query 48617 CAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCT 48676 | |||||| |||||||||||||| ||||| ||||| | |||| || |||||||| Sbjct 271244 GAGCTGCTTGCCGGCAAATATCAGACGCTGCTGATCAGGTGGAATTCCTTCCTTGTCCTG 271185 Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 |||||||| ||||| | | | || || || | ||||| |||| || ||||| || Sbjct 271184 GATCTTTTGCTTTACGTTATCGATCGAGTCCGAAGGTTCCACGTCCAAAGTGATCGTCTT 271125 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769 || |||| ||| || || ||||| ||||| || Sbjct 271124 ACCAGTCAGAGTCTTGACGAAAATTTGCATTGT 271092 >seq1775 Length=332822 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || |||||||| | || ||||| ||||| ||||||||||| || | Sbjct 274998 CCGCCACGCAGACGCAACACGAGGTGCAGCGTCGATTCTTTCTGAATATTGTAGTCTGCC 274939 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | || | || || | |||||| || ||||| ||||| ||||| || || | ||| Sbjct 274938 AAAGTCCGGCCATCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGA 274879 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| ||| || ||||| ||| | | || || | |||||| Sbjct 274878 ATCCCTTCCTTGTCCTGAATTTTCTGTTTGACATTGTCAATGCTATCCGAGGGCTCCACG 274819 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| |||||| || || ||||||| || || || ||||||||||| Sbjct 274818 TCCAGCGTAATGGTCTTGCCCGTCAGGGTCTTGACGAAAATCTGCAT 274772 >seq1355 Length=184863 Score = 98.7 bits (108), Expect = 8e-16 Identities = 157/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||| | || || || |||||| || || ||||| || ||| | || Sbjct 90437 AGGCGCAACACAAGGTGAAGAGTCGACTCTTTCTGGATGTTGTAGTCGCTCAGAGTACGG 90496 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| ||||||||||| || ||||| || || || || || || | |||| || ||| Sbjct 90497 CCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGAATTCCTTCC 90556 Query 48669 TTGTCGCTAA---TCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACC 48725 ||||| |||| |||| || || || | | || || || | ||| || || | Sbjct 90557 TTGTC-CTAAATTTCTTCTGCTTCAC-TTGTCGATCGAGTCGGAAG-CTCAACGTCAAGA 90613 Query 48726 GTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || |||||||||||||| || |||||||||||||| Sbjct 90614 GTAATAGTCTTTCCCGTCAAAGTCTTGACAAAAATCTGCAT 90654 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||| | || || || ||| || || || ||||| || ||| | || Sbjct 90665 AGACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGG 90724 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| ||||||||||| || ||||| || || || || || || | |||| || ||| Sbjct 90725 CCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGAATTCCTTCC 90784 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || || || | | || || || | ||| || || | || Sbjct 90785 TTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCAACGTCAAGAGTG 90844 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || |||||||||||||| || || ||||||||||| Sbjct 90845 ATTGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 90882 Score = 95.1 bits (104), Expect = 9e-15 Identities = 155/222 (70%), Gaps = 1/222 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTT-CG 48607 || |||||||| | || || || ||| || || || ||||| || | | || || Sbjct 91122 AGACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTTACG 91181 Query 48608 ATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTC 48667 |||| ||||||||||| || ||||| || || || || || || | |||| || || Sbjct 91182 GCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGAATTCCTTC 91241 Query 48668 CTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727 |||||| |||||| || || || | | | || || || | ||| || || | || Sbjct 91242 CTTGTCCTGAATCTTCTGCTTCACGTTATCGATCGAGTCAGATGGCTCTACGTCGAGAGT 91301 Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769 || || |||||||||| || ||||||||||||||||| || Sbjct 91302 GATTGTCTTTCCCGTCAGCGTCTTTACAAAAATCTGCATTGT 91343 Score = 89.7 bits (98), Expect = 4e-13 Identities = 152/219 (69%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTT-TGAATATTGTAATCAGATAGACTTCG 48607 || |||||||| | || || || ||| ||| || || ||||| || | | | || Sbjct 90893 AGACGCAACACAAGGTGAAGGGTCGACTCCTTTCTGGATGTTGTAGTCGCTCAAAGTACG 90952 Query 48608 ATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTC 48667 |||| ||||||||||| || ||||| || || || || || || | |||| || || Sbjct 90953 GCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGAATTCCTTC 91012 Query 48668 CTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727 |||||| |||||| || || || | | || || || | ||| || || | || Sbjct 91013 CTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCAACGTCAAGAGT 91072 Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || |||||||||||||| || || ||||||||||| Sbjct 91073 GATTGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 91111 >seq1177 Length=179586 Score = 95.1 bits (104), Expect = 9e-15 Identities = 117/158 (74%), Gaps = 4/158 (3%) Strand=Plus/Plus Query 9091 AATTGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTCGGAATGA--TTGAACA 9148 ||||| ||||| | ||||||||| || | |||||| || || | | ||| ||||| | Sbjct 174237 AATTGCGCAATGCGGTCCCCCTTTTTAATGACAAAATCAGTTTTGC--TGAAGTTGAAAA 174294 Query 9149 GCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGCACCCACGTCGATGA 9208 | | || |||||||| | ||| || ||||| | ||||||||||| |||||||| | Sbjct 174295 GGATTACGGTGACGTTACCACGGTAGTCTTCATCAACTACACCAGCACCGACGTCGATAA 174354 Query 9209 AGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCGA 9246 ||| |||| | || |||||||| || || || || ||| Sbjct 174355 AGTTCTTGGCAGCGAGTCCAGAACGAGGGGCAATGCGA 174392 >seq1110 Length=486086 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 48579 TTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATC 48638 |||||||| ||||| || | || || | || || | ||||| || ||||| ||| Sbjct 256290 TTTTGAATGTTGTAGTCCGCAAGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAGATC 256231 Query 48639 AGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCC 48698 | ||||| || || | |||| ||| |||||||| || || || |||||| | Sbjct 256230 AAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTACATTGTCA 256171 Query 48699 ACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAA 48758 | ||||||| ||||| |||| |||||| || || |||||||| || || |||||| Sbjct 256170 ATGCTGTCTGACGGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTCTTGACAAAA 256111 Query 48759 ATCTGCAT 48766 |||||||| Sbjct 256110 ATCTGCAT 256103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380927548604295