Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_019405.1 Length=215710 Score E Sequences producing significant alignments: (Bits) Value seq1612 489 2e-133 >seq1612 Length=217819 Score = 489 bits (542), Expect = 2e-133 Identities = 735/1033 (71%), Gaps = 37/1033 (4%) Strand=Plus/Minus Query 136648 CCCTTCACGCAGAGGACTTGCTTGAGGGTGTGGACGATGTCCACGAGGTCCTTCTGGGCC 136707 ||||||||||| | || |||||||| ||||| |||| ||||| ||||| | ||| ||| Sbjct 128160 CCCTTCACGCACACCACCTGCTTGAGCGTGTGCACGACCTCCACCAGGTCTTGCTGAGCC 128101 Query 136708 TCCATGACCGCGTCGATGTCCTTGTAGGCCATCGGGATTTCGTCGATCACGCCAGCGTCC 136767 |||| |||||||||||||||||||||||||||||||| |||||||| ||| | ||||| Sbjct 128100 GCCATCACCGCGTCGATGTCCTTGTAGGCCATCGGGATCTCGTCGATGACGTCCTCGTCC 128041 Query 136768 TTGCGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCCTCCAGGGTGAAG-GTCGCCTT 136826 |||||||||||||| || ||||| ||| | |||||||| ||| ||||| | ||| || Sbjct 128040 TTGCGGCACTCCACCCCTTCGGTCGCCGCGCGCTGGTCCTTCAGCGTGAAACGACGC-TT 127982 Query 136827 GGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGCGAGCACGAGCAGAACGAGTCCGC 136886 ||| | ||| || |||||| ||||| || ||||||||||| | ||| ||||| Sbjct 127981 GGCTTCGGTACGGCTCATCGTGCGGCCGGCCCCGTGCGAGCAGCTGTCGAAGCTCTCCGC 127922 Query 136887 ATTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATCCCGAA 136946 |||||||||||||||||||||||| || ||||| |||||| |||||||| | Sbjct 127921 GTTGCCCTTGCCGCGCACGATGTAGCTGCGCGCGCCCATGCTGCCGGGAATGATCCCCAT 127862 Query 136947 CTGGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTG 137006 |||| ||| || ||| |||||||||||||||||||||||| || || | ||||||| Sbjct 127861 CTGGCCCTGCTTCGCGCTCACCGCGCCCTTGCGGGTCACGAACACGTCCTGGCCGAAGTG 127802 Query 137007 GAATTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCTTGAACGG 137066 | |||||||| |||||||||||||||||||||||||| || ||| | || |||||| Sbjct 127801 GGTCTCCTTCTGCACGTAGTTGTGGTGGCAGTTCACCGCCTCGATGTGGGCCTCGAACGG 127742 Query 137067 C--GGCAGGCCCGACGCCCGCATGGCCTCCAGGACCCGGACCATCATCATCTCGCGGTTG 137124 | ||| | | | || | || | | ||| ||| |||||||| |||||| ||| Sbjct 127741 CTTGGC--GATCACCTTCCTCGCCGCGCCGATGACGCGGCGCATCATCAGCTCGCGATTG 127684 Query 137125 ATCCGCGCGAAGTCCTGGCCCCAGGCGACGGCTTCCACGTAGTCGTGGAACTCCGGCTCG 137184 || ||||| | ||| ||||| || || |||||||||| ||| | | | || Sbjct 127683 GTCTCGGCGAACTTCTGCGCCCAGCTCACCGCGCGCACGTAGTCGCCGAAGTACTTCGCG 127624 Query 137185 CCTTCGCAGAGCCAAGCAAGGTCCTTGTCCAGCGGCTTGCGCCCGTCACGACGCA--GCA 137242 ||||| || | || || | | | || || | ||| ||| | | | ||| || Sbjct 127623 CCTTCCTCGAAGTAGGCGAGATTCGTATCGGGCAGGTTG-GCC--TGATGCTGCATCGCG 127567 Query 137243 TCATCTCCTTGGCCTTCTCGATGAAGATGCGGCCGATGGTGTTGCCGACGCCGCGCGAGC 137302 || || ||| ||| ||||||||| || |||||| | |||||| ||||||||||||| Sbjct 127566 TC--CTTCTTCGCCAGCTCGATGAACATCGTGCCGATCGCGTTGCCCACGCCGCGCGAGC 127509 Query 137303 CCGAGTGGAGCATCACCCAGACGCGCTGGTCCTCGTCGAGGCAGACCTCGATGAAGTGGT 137362 |||| || ||||| | ||| ||| |||| || |||||||||||||||||||||| Sbjct 127508 CCGAATGCAGCATGAACCACACGAAGCCCCCCTCATCCAGGCAGACCTCGATGAAGTGGT 127449 Query 137363 TGCCGCCGCCCAGGGTGCCCAGTTGGACCACGCTGTTGGCGTTCTTCAGCGCCGGGTACT 137422 |||| || || |||||||| || | |||| | |||| ||||| || || | Sbjct 127448 TGCCCGTCCCGAGCGTGCCCAGGTGCTTGTGGTTGTTCGTGTTCCTCAGCTTGGGATAGT 127389 Query 137423 TCTCGCAGAGCTTGTCGAACCGCGCCTC----CAGGCCC-----GAATCGACCCACTTGC 137473 ||| |||| | ||| | ||| | ||||| | ||||||| || | Sbjct 127388 CGCGGCACAGCTCGGTGAAGTCGGACTCGAGTCCGGCCCAGGCGGCATCGACCATCTCGG 127329 Query 137474 GCAGGATCGAGTTGGGGATGCCGCTGCGCCCGTTCCAGCCGCCCGACGGACCCGGCCCGC 137533 || || || | || | |||||| | || |||| || || | || Sbjct 127328 GCGGGTTC----------TCCCAC-GCGCCCACGTC-GCGGCCCCTGGG---CGTGCGGC 127284 Query 137534 CGTGCGGGACGGCGTGCTCGATCAGCGAGCGAAGCTTGGACAGGCTGTCGGGAAGGTCCG 137593 |||| || || ||| |||||| |||||| ||| | |||| |||| || |||||| Sbjct 127283 CGTGAGGCACCGCGGCTTCGATCGCCGAGCGGAGCGGCGCCAGGTTGTCCGGCAGGTCCT 127224 Query 137594 ACGCGGTCAGGCTGGTGCGGACCGCCATCATGCCGCAGCCGATGTCGACGCCGACGGCGG 137653 |||| ||| |||| | |||||||| |||||||||||||| || ||||| |||| Sbjct 127223 CCGCGCGCAGCGTGGTCTTGCAGGCCATCATCCCGCAGCCGATGTCCACCCCGACCGCGG 127164 Query 137654 CCGGGATGATCGC 137666 |||||||||| || Sbjct 127163 CCGGGATGATTGC 127151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 690125322978000