Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq1612 432 7e-116 seq1 102 1e-16 >seq1612 Length=217819 Score = 432 bits (478), Expect = 7e-116 Identities = 788/1140 (69%), Gaps = 54/1140 (5%) Strand=Plus/Minus Query 168273 CCCTTGACGCACAACACCTGCTTGAGGGTGGCGACGATCTCCACCATTTCTTCCTGGGCC 168332 ||||| ||||||| |||||||||||| ||| |||| |||||||| |||| ||| ||| Sbjct 128160 CCCTTCACGCACACCACCTGCTTGAGCGTGTGCACGACCTCCACCAGGTCTTGCTGAGCC 128101 Query 168333 GCCATGACGAGTTCGATCGGCTTGTAAGCCTTCGGCGTCTCGTCGATCACGCCTTCGTCC 168392 ||||| || ||||| |||||| ||| |||| |||||||||| ||| | |||||| Sbjct 128100 GCCATCACCGCGTCGATGTCCTTGTAGGCCATCGGGATCTCGTCGATGACGTCCTCGTCC 128041 Query 168393 TTGCGGCACTCGACGCCCTTCG-TGGCTTCGACGTGCTCGTCCAGGGAGACGAGCTTCTT 168451 ||||||||||| || ||||||| | || || || || | ||| | || | ||| Sbjct 128040 TTGCGGCACTCCAC-CCCTTCGGTCGCCGCGCGCTGGTCCTTCAGCGTGAAACGACGCTT 127982 Query 168452 CGCCGCCGAACGCGACATGACGCGGCCGGCGCCGTGGCTGCACGAGCAGAAGGCGTCAGC 168511 || | | ||| ||| ||||||||| ||||| ||| | |||| || || Sbjct 127981 GGCTTCGGTACGGCTCATCGTGCGGCCGGCCCCGTGCGAGCAGCTGTCGAAGCTCTCCGC 127922 Query 168512 GTGGCCCTTGCCGCGCACGATGAACGACTTGGCGCCCATCGAACCCGGAATGATGCCGAG 168571 || ||||||||||||||||||| | |||||||| || |||||||| || | Sbjct 127921 GTTGCCCTTGCCGCGCACGATGTAGCTGCGCGCGCCCATGCTGCCGGGAATGATCCCCAT 127862 Query 168572 TTCGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGATGTCCTCGCCGAAGTG 168631 | | ||| || ||| |||||||||||||||||||||||| | ||||| ||||||||| Sbjct 127861 CTGGCCCTGCTTCGCGCTCACCGCGCCCTTGCGGGTCACGAACACGTCCTGGCCGAAGTG 127802 Query 168632 GCGTTCCTTGTTGACGTAGTTGTGGTGACAGTTCACCGCTTCCTTGTCGGTCTTGAACGC 168691 | ||||| | |||||||||||||| ||||||||||| || ||| || || ||||| Sbjct 127801 GGTCTCCTTCTGCACGTAGTTGTGGTGGCAGTTCACCGCCTCGATGTGGGCCTCGAACGG 127742 Query 168692 C--GGC-ACGAACTCCCGGATCGCCTTGAGCACGCGGACCATCATCATGTCGCGGTTCAG 168748 | ||| | | || || ||| || |||||| |||||||| ||||| || | Sbjct 127741 CTTGGCGATCACCTTCCTCGCCGCGCCGATGACGCGGCGCATCATCAGCTCGCGATT-GG 127683 Query 168749 GCGC-GCGAAGTCTTGCGCCCAGCCCACGGCTTCGATGTAGTCGTCGAAATCCTGCTCGC 168807 | | ||||| | |||||||||| ||| || | ||||||| |||| | || | ||| Sbjct 127682 TCTCGGCGAACTTCTGCGCCCAGCTCACCGCGCGCACGTAGTCGCCGAAGTACTTCGCGC 127623 Query 168808 CCACTTCGAGCCACGCGAGGTTCTCGTCCTGCGGGCGCACATGGCGCTTTGCCAGGGCGT 168867 | | |||| | ||||| ||| || || || | || ||| | | | | Sbjct 127622 CTTCCTCGAAGTAGGCGAGATTCGTATCGGGCAGGTTGGCCTGATGCTGCATCGCGTCCT 127563 Query 168868 TCTTCGCCTTCTCGATGAAGTAGTTGCCGATCACGTTGCCGACGCCGCGCGATCCCGAGT 168927 |||||||| ||||||||| |||||||| ||||||| ||||||||||| ||||| | Sbjct 127562 TCTTCGCCAGCTCGATGAACATCGTGCCGATCGCGTTGCCCACGCCGCGCGAGCCCGAAT 127503 Query 168928 GCAGCATCACCCACACGTTCGGGTCCGTCGTCCCCTGATCGGTCTGGATGCAGATTTCGA 168987 ||||||| | ||||||| | | ||||| ||| | ||||| |||| Sbjct 127502 GCAGCATGAACCACACG---AAGCC------CCCCTCATC------CAGGCAGACCTCGA 127458 Query 168988 TGAAGTGGTTGCCGCCACCCAGCGACCCGAGTTGGGTCACGTTGTTCGACGTCTCCAAGA 169047 ||||||||||||| || |||| || || || | |||||||| || || Sbjct 127457 TGAAGTGGTTGCCCGTCCCGAGCGTGCCCAGGTGCTTGTGGTTGTTCGTGTTCCTCAGCT 127398 Query 169048 TCGGATGCTTTTCGCACAGCTTCTTGAACCGCGCCTCCAGCCCAGAATCGATCCAGGCAC 169107 | |||| | |||||||| |||| | ||| || | || |||||| Sbjct 127397 TGGGATAGTCGCGGCACAGCTCGGTGAAGTCGGACTCGAGTC------CGGCCCAGGC-G 127345 Query 169108 GCATGATAGAGTTCGGGATGCCATGACGACCCGGTTCCTGCCACGAACC--CTTCGCGCC 169165 ||| ||| |||| || | |||| || ||||| || | ||||| | Sbjct 127344 GCA---------TCG----ACCATCTCGGGCGGGTT-CTCCCACGCGCCCACGTCGCGGC 127299 Query 169166 C----GGC---CCGCCGTGCGGAACCGCACGTTCGATCGCCGAACGCATCGCCGCCAAGT 169218 | ||| | |||||| || ||||| |||||||||||| || | || ||||| || Sbjct 127298 CCCTGGGCGTGCGGCCGTGAGGCACCGCGGCTTCGATCGCCGAGCGGAGCGGCGCCAGGT 127239 Query 169219 TGTCCGGCAGTTGCGAAGCAGTCAGCGTGGT-GCGCACAGCCATCATGCCGCAGCCGATG 169277 |||||||||| | | || ||||||||| ||| |||||||| |||||||||||| Sbjct 127238 TGTCCGGCAGGTCCTCCGCGCGCAGCGTGGTCTTGCA-GGCCATCATCCCGCAGCCGATG 127180 Query 169278 TCGACGCCGACCGCGTACGGGATCACCGCATCCTTGGTCGGGATCACCGAACCAACGGCT 169337 || || ||||||||| |||||| | || | | |||||||||||||| || || | | Sbjct 127179 TCCACCCCGACCGCGGCCGGGATGATTGCCTTCAGCGTCGGGATCACCGACCCCACCGTT 127120 Query 169338 GCGCCGTACCCGGCGTGGACGTCGGGCATCACCGCGACGTGCTTGAACACGAACGGCAGC 169397 |||||| || ||||||| ||||||||| | |||| |||||||||||||| ||||||| Sbjct 127119 GCGCCGATGCCCACGTGGACATCGGGCATCGCGGCGATGTGCTTGAACACGACCGGCAGC 127060 >seq1 Length=384404 Score = 102 bits (112), Expect = 1e-16 Identities = 70/79 (89%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 |||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||||||| Sbjct 369608 GCGGGGTGGAGCAGTCTGGTAGCTCGTTGGGCTCATAACCCAAAGGTCGTCGGTTCAAAT 369549 Query 133023 CCCTCCCCCGCATCCACAA 133041 || |||||||| ||| || Sbjct 369548 CCGGCCCCCGCAACCAGAA 369530 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 132967 GGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAATCCCT 133026 |||||||||||| ||||||||||| ||||||||||| |||||||| ||||||||||| Sbjct 369441 GGTGGAGCAGTCTGGTAGCTCGTTGGGCTCATAACCCAAAGGTCGTCGGTTCAAATCCGG 369382 Query 133027 CCCCCGCATCCA 133038 |||||||| ||| Sbjct 369381 CCCCCGCAACCA 369370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895742158321800