Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_019407.1 Length=218929 Score E Sequences producing significant alignments: (Bits) Value seq1612 480 1e-130 >seq1612 Length=217819 Score = 480 bits (532), Expect = 1e-130 Identities = 733/1033 (71%), Gaps = 37/1033 (4%) Strand=Plus/Minus Query 135408 CCCTTCACGCAGAGGACTTGCTTGAGGGTGTGGACGATGTCCACGAGGTCCTTCTGGGCC 135467 ||||||||||| | || |||||||| ||||| |||| ||||| ||||| | ||| ||| Sbjct 128160 CCCTTCACGCACACCACCTGCTTGAGCGTGTGCACGACCTCCACCAGGTCTTGCTGAGCC 128101 Query 135468 TCCATGACCGCGTCGATGTCCTTGTAGGCCATCGGGATTTCGTCGATCACGCCAGCGTCC 135527 |||| |||||||||||||||||||||||||||||||| |||||||| ||| | ||||| Sbjct 128100 GCCATCACCGCGTCGATGTCCTTGTAGGCCATCGGGATCTCGTCGATGACGTCCTCGTCC 128041 Query 135528 TTACGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCCTCCAGGGTGAAG-GTCGCCTT 135586 || ||||||||||| || ||||| ||| | |||||||| ||| ||||| | ||| || Sbjct 128040 TTGCGGCACTCCACCCCTTCGGTCGCCGCGCGCTGGTCCTTCAGCGTGAAACGACGC-TT 127982 Query 135587 GGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGCGAGCACGAGCAGAACGAGTCCGC 135646 ||| | ||| || |||||| ||||| || ||||||||||| | ||| ||||| Sbjct 127981 GGCTTCGGTACGGCTCATCGTGCGGCCGGCCCCGTGCGAGCAGCTGTCGAAGCTCTCCGC 127922 Query 135647 ATTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATCCCGAA 135706 |||||||||||||||||||||||| || ||||| |||||| |||||||| | Sbjct 127921 GTTGCCCTTGCCGCGCACGATGTAGCTGCGCGCGCCCATGCTGCCGGGAATGATCCCCAT 127862 Query 135707 CTGGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTG 135766 |||| ||| || ||| |||||||||||||||||||||||| || || | ||||||| Sbjct 127861 CTGGCCCTGCTTCGCGCTCACCGCGCCCTTGCGGGTCACGAACACGTCCTGGCCGAAGTG 127802 Query 135767 GAATTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCTTGAACGG 135826 | |||||||| |||||||||||||||||||||||||| || ||| | || |||||| Sbjct 127801 GGTCTCCTTCTGCACGTAGTTGTGGTGGCAGTTCACCGCCTCGATGTGGGCCTCGAACGG 127742 Query 135827 C--GGCAGGCCCGACGCCCGCATGGCCTCCAGGACCCGGACCATCATCATCTCGCGGTTG 135884 | ||| | | | ||| ||| | ||| ||| |||||||| |||||| ||| Sbjct 127741 CTTGGCGATCACCTTCCTCGCCGCGCCG--ATGACGCGGCGCATCATCAGCTCGCGATTG 127684 Query 135885 ATCCGCGCGAAGTCCTGGCCCCAGGCGACGGCTTCCACGTAGTCGTGGAACTCCGGTTCG 135944 || ||||| | ||| ||||| || || |||||||||| ||| | | || Sbjct 127683 GTCTCGGCGAACTTCTGCGCCCAGCTCACCGCGCGCACGTAGTCGCCGAAGTACTTCGCG 127624 Query 135945 CCTTCGCAGAGCCAAGCAAGGTCCTTGTCCAGCGGCTTGCGCCCGTCACGCCGCA--GCA 136002 ||||| || | || || | | | || || | ||| ||| | | || ||| || Sbjct 127623 CCTTCCTCGAAGTAGGCGAGATTCGTATCGGGCAGGTTG-GCCTG--ATGCTGCATCGCG 127567 Query 136003 TCATCTCCTTGGCCTTCTCGATGAAGATACGGCCGATGGTGTTGCCGACGCCGCGCGAGC 136062 || || ||| ||| ||||||||| || |||||| | |||||| ||||||||||||| Sbjct 127566 TC--CTTCTTCGCCAGCTCGATGAACATCGTGCCGATCGCGTTGCCCACGCCGCGCGAGC 127509 Query 136063 CCGAGTGGAGCATCACCCAGACGCGCTGGTCCTCGTCGAGGCAGACCTCGATGAAGTGGT 136122 |||| || ||||| | ||| ||| |||| || |||||||||||||||||||||| Sbjct 127508 CCGAATGCAGCATGAACCACACGAAGCCCCCCTCATCCAGGCAGACCTCGATGAAGTGGT 127449 Query 136123 TGCCGCCGCCCAGGGTGCCCAGTTGGACCACGCTGTTGGCGTTCTTCAGCGCCGGGTACT 136182 |||| || || |||||||| || | |||| | |||| ||||| || || | Sbjct 127448 TGCCCGTCCCGAGCGTGCCCAGGTGCTTGTGGTTGTTCGTGTTCCTCAGCTTGGGATAGT 127389 Query 136183 TCTCGCAGAGCTTGTCGAACCGCGCCTC----CAGGCCC-----GAGTCGACCCACTTGC 136233 ||| |||| | ||| | ||| | ||||| | |||||| || | Sbjct 127388 CGCGGCACAGCTCGGTGAAGTCGGACTCGAGTCCGGCCCAGGCGGCATCGACCATCTCGG 127329 Query 136234 GCAGGATCGAGTTGGGGATGCCGCTGCGCCCGTTCCAGCCGCCCGACGGACCCGGCCCGC 136293 || || || | || | |||||| | || |||| || || | || Sbjct 127328 GCGGGTTC----------TCCCAC-GCGCCCACGTC-GCGGCCCCTGGG---CGTGCGGC 127284 Query 136294 CGTGCGGGACGGCGTGCTCGATCAGCGAGCGAAGCTTGGACAGGCTGTCGGGAAGGTCCG 136353 |||| || || ||| |||||| |||||| ||| | |||| |||| || |||||| Sbjct 127283 CGTGAGGCACCGCGGCTTCGATCGCCGAGCGGAGCGGCGCCAGGTTGTCCGGCAGGTCCT 127224 Query 136354 ACGCGGTCAGGCTGGTGCGGACCGCCATCATGCCGCAGCCGATGTCGACGCCGACGGCGG 136413 |||| ||| |||| | |||||||| |||||||||||||| || ||||| |||| Sbjct 127223 CCGCGCGCAGCGTGGTCTTGCAGGCCATCATCCCGCAGCCGATGTCCACCCCGACCGCGG 127164 Query 136414 CCGGGATGATCGC 136426 |||||||||| || Sbjct 127163 CCGGGATGATTGC 127151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 700425844212600