Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_019408.1 Length=223720 Score E Sequences producing significant alignments: (Bits) Value seq1612 401 9e-107 >seq1612 Length=217819 Score = 401 bits (444), Expect = 9e-107 Identities = 681/973 (70%), Gaps = 39/973 (4%) Strand=Plus/Minus Query 139505 GCGGCACTCGACGCCTTCGGTCGCCTTGATCTGGTCTTCCAGCGTGAAGGCGGC-CTTGG 139563 ||||||||| || |||||||||||| | |||||| | ||||||||| || | ||||| Sbjct 128038 GCGGCACTCCACCCCTTCGGTCGCCGCGCGCTGGTCCTTCAGCGTGAAA-CGACGCTTGG 127980 Query 139564 CGGCGGTGCGCGACATGGTCCGCCCCGCGCCGTGCGAGCACGAGCAGAACGAGTCGGCGT 139623 | |||| || ||| || || || || ||||||||||| | ||| || |||| Sbjct 127979 CTTCGGTACGGCTCATCGTGCGGCCGGCCCCGTGCGAGCAGCTGTCGAAGCTCTCCGCGT 127920 Query 139624 TGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATGCCGAACT 139683 ||||||||||||||||||||||| || ||||| |||||| ||||| || | || Sbjct 127919 TGCCCTTGCCGCGCACGATGTAGCTGCGCGCGCCCATGCTGCCGGGAATGATCCCCATCT 127860 Query 139684 GGTCCTTCTGAGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTGGA 139743 || ||| || || |||||||||||||||||||||||| || || | |||||||| Sbjct 127859 GGCCCTGCTTCGCGCTCACCGCGCCCTTGCGGGTCACGAACACGTCCTGGCCGAAGTGGG 127800 Query 139744 ACTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCTTGAAGGGC- 139802 ||||||||| |||||||||||||||||||||||||| || ||| | || ||| ||| Sbjct 127799 TCTCCTTCTGCACGTAGTTGTGGTGGCAGTTCACCGCCTCGATGTGGGCCTCGAACGGCT 127740 Query 139803 -GGCAGGCCCGAGGCGCGCATGGCGTCCAGGACCCGGATCATCATCATCTCGCGGTTGAT 139861 ||| | | | ||| ||| | | ||| ||| |||||||| |||||| ||| | Sbjct 127739 TGGCGATCACCTTCCTCGC--CGCGCCGATGACGCGGCGCATCATCAGCTCGCGATTGGT 127682 Query 139862 CCGCGCGAAGTCCTGACCCCAGGCGACGGCTTCCACGTAGTCGTAGAATTCCGGCTCGCC 139921 | ||||| | ||| ||||| || || |||||||||| ||| | | | |||| Sbjct 127681 CTCGGCGAACTTCTGCGCCCAGCTCACCGCGCGCACGTAGTCGCCGAAGTACTTCGCGCC 127622 Query 139922 TTCCGACAGCCACGCGAGGTCCTTGTCGAGCGGCTTCTGACCGTCCCGACGCAGCATC-- 139979 |||| | | ||||| | | | ||| || | || | || || || ||||| Sbjct 127621 TTCCTCGAAGTAGGCGAGATTCGTATCGGGCAGGTT------GGCCTGATGCTGCATCGC 127568 Query 139980 -ATCTCCTTGGCCTTCTCGATGAAGATACGGCCGATGGTGTTGCCGACGCCGCGCGAGCC 140038 || ||| ||| ||||||||| || |||||| | |||||| |||||||||||||| Sbjct 127567 GTCCTTCTTCGCCAGCTCGATGAACATCGTGCCGATCGCGTTGCCCACGCCGCGCGAGCC 127508 Query 140039 CGAGTGGAGCATCACCCAGACGCGCTGGTCCTCGTCGAGGCAGACCTCGATGAAGTGGTT 140098 ||| || ||||| | ||| ||| |||| || ||||||||||||||||||||||| Sbjct 127507 CGAATGCAGCATGAACCACACGAAGCCCCCCTCATCCAGGCAGACCTCGATGAAGTGGTT 127448 Query 140099 GCCGCCGCCCAGCGTGCCCAGTTGGACGACGCTGTTGGCGTTCTTGAGGGTCTTGTACTT 140158 ||| || ||||||||||| || | | |||| | |||| | || |||| | Sbjct 127447 GCCCGTCCCGAGCGTGCCCAGGTGCTTGTGGTTGTTCGTGTTCCTCAG---CTTGGGATA 127391 Query 140159 GTCGCAGAGCTTCTCGAACCGGGCTTCCAGGCCCGAGT-CGACCCACTTGCGCATGATCG 140217 ||||| | | |||| | | | | | ||||| || |||| | |||| | Sbjct 127390 GTCGCGGCACAGCTCG----GTGAAGTCGGACTCGAGTCCGGCCCAGGCG-GCATCGACC 127336 Query 140218 AGTTCG---GGATGCCGCTACGCCCGTTCCA----GCCGCCCGACGGACCCGGCCCGCCG 140270 | ||| || | | | |||| | ||| || |||| || || | |||| Sbjct 127335 ATCTCGGGCGGGTTCTCCCACGCGC---CCACGTCGCGGCCCCTGGG---CGTGCGGCCG 127282 Query 140271 TGCGGGACGGCGTGCTCGATCAGCGAGCGCAGCTTGGCGAGGCTGTCGGGCAGGTCCGAG 140330 || || || ||| |||||| |||||| ||| || ||| |||| ||||||||| Sbjct 127281 TGAGGCACCGCGGCTTCGATCGCCGAGCGGAGCGGCGCCAGGTTGTCCGGCAGGTCCTCC 127222 Query 140331 GCCTTCAGCGAGGT-GCGCACGGCCATCATGCCGCAGCCGATGTCCACGCCCACGGCCGC 140389 || ||||| ||| ||| ||||||||| ||||||||||||||||| || || || || Sbjct 127221 GCGCGCAGCGTGGTCTTGCA-GGCCATCATCCCGCAGCCGATGTCCACCCCGACCGCGGC 127163 Query 140390 CGGGATGATGGCGCCCTTGGTCGGGATCACCGAGCCCACGGTCGAGCCGATGCCCATGTG 140449 ||||||||| || | |||||||||||||| ||||| || | ||||||||||| ||| Sbjct 127162 CGGGATGATTGCCTTCAGCGTCGGGATCACCGACCCCACCGTTGCGCCGATGCCCACGTG 127103 Query 140450 GACGTCCGGCATC 140462 ||| || |||||| Sbjct 127102 GACATCGGGCATC 127090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715756629312000