Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_019410.1 Length=221828 Score E Sequences producing significant alignments: (Bits) Value seq1612 416 4e-111 >seq1612 Length=217819 Score = 416 bits (460), Expect = 4e-111 Identities = 712/1031 (69%), Gaps = 33/1031 (3%) Strand=Plus/Minus Query 137207 CCCTTCACGCAGAGGACTTGCTTGAGGGTGTGGACGATGTCCACGAGGTCCTTCTGGGCC 137266 ||||||||||| | || |||||||| ||||| |||| ||||| ||||| | ||| ||| Sbjct 128160 CCCTTCACGCACACCACCTGCTTGAGCGTGTGCACGACCTCCACCAGGTCTTGCTGAGCC 128101 Query 137267 TCCATGACCGCGTCGNNNNNNNNNNNNNNNNNNNNNATTTCGTCGATCACGCCGGCGTCC 137326 |||| ||||||||| || |||||||| ||| | ||||| Sbjct 128100 GCCATCACCGCGTCGATGTCCTTGTAGGCCATCGGGATCTCGTCGATGACGTCCTCGTCC 128041 Query 137327 TTGCGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCCTCCAGAGTGAAG-GTCGCCTT 137385 |||||||||||||| || ||||| ||| | |||||||| ||| ||||| | ||| || Sbjct 128040 TTGCGGCACTCCACCCCTTCGGTCGCCGCGCGCTGGTCCTTCAGCGTGAAACGACGC-TT 127982 Query 137386 GGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGCGAGCACGAGCAGAACGAGTCCGC 137445 ||| | ||| || |||||| ||||| || ||||||||||| | ||| ||||| Sbjct 127981 GGCTTCGGTACGGCTCATCGTGCGGCCGGCCCCGTGCGAGCAGCTGTCGAAGCTCTCCGC 127922 Query 137446 ATTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATCCCGAA 137505 |||||||||||||||||||||||| || ||||| |||||| |||||||| | Sbjct 127921 GTTGCCCTTGCCGCGCACGATGTAGCTGCGCGCGCCCATGCTGCCGGGAATGATCCCCAT 127862 Query 137506 CTGGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTG 137565 |||| ||| || ||| |||||||||||||||||||||||| || || | ||||||| Sbjct 127861 CTGGCCCTGCTTCGCGCTCACCGCGCCCTTGCGGGTCACGAACACGTCCTGGCCGAAGTG 127802 Query 137566 GAATTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCTTGAACGG 137625 | |||||||| |||||||||||||||||||||||||| || ||| | || |||||| Sbjct 127801 GGTCTCCTTCTGCACGTAGTTGTGGTGGCAGTTCACCGCCTCGATGTGGGCCTCGAACGG 127742 Query 137626 C--GGCAGGCCCGACGCCCGCATGGCCTCCAGGACCCGGACCATCATCATCTCGCGGTTG 137683 | ||| | | | ||| ||| | ||| ||| |||||||| |||||| ||| Sbjct 127741 CTTGGCGATCACCTTCCTCGCCGCGCCG--ATGACGCGGCGCATCATCAGCTCGCGATTG 127684 Query 137684 ATCCGCGCGAAGTCCTGGCCCCAGGCGACGGCTTCCACGTAGTCGTGGAACTCCGGCTCG 137743 || ||||| | ||| ||||| || || |||||||||| ||| | | | || Sbjct 127683 GTCTCGGCGAACTTCTGCGCCCAGCTCACCGCGCGCACGTAGTCGCCGAAGTACTTCGCG 127624 Query 137744 CCTTCGCAGAGCCAAGCAAGGTCCTTGTCCAGCGGCTTGCGCCCGTCACGGCGCAGCATC 137803 ||||| || | || || | | | || || | ||| ||| | | || || || Sbjct 127623 CCTTCCTCGAAGTAGGCGAGATTCGTATCGGGCAGGTTG-GCCTGATGCTGCATCGCGTC 127565 Query 137804 ATCTCCTTGGCCTTCTCGATGAAGATGCGGCCGATGGTGTTGCCGACGCCGCGCGAGCCC 137863 || ||| ||| ||||||||| || |||||| | |||||| ||||||||||||||| Sbjct 127564 --CTTCTTCGCCAGCTCGATGAACATCGTGCCGATCGCGTTGCCCACGCCGCGCGAGCCC 127507 Query 137864 GAGTGGAGCATCACCCAGACGCGCTGATCCTCGTCGAGGCAGACCTCGATGAAGTGGTTG 137923 || || ||||| | ||| ||| |||| || |||||||||||||||||||||||| Sbjct 127506 GAATGCAGCATGAACCACACGAAGCCCCCCTCATCCAGGCAGACCTCGATGAAGTGGTTG 127447 Query 137924 CCGCCGCCCAGGGTGCCCAGTTGGACCACGCTGTTGGCGTTCTTCAGCGCCGGGTACTTC 137983 || || || |||||||| || | |||| | |||| ||||| || || | Sbjct 127446 CCCGTCCCGAGCGTGCCCAGGTGCTTGTGGTTGTTCGTGTTCCTCAGCTTGGGATAGTCG 127387 Query 137984 TCGCAGAGCTTGTCGAACCGCGCCTC----CAGGCCC-----GAATCGACCCACTTGCGC 138034 ||| |||| | ||| | ||| | ||||| | ||||||| || | || Sbjct 127386 CGGCACAGCTCGGTGAAGTCGGACTCGAGTCCGGCCCAGGCGGCATCGACCATCTCGGGC 127327 Query 138035 AGGATCGAGTTGGGGATGCCGCTGCGCCCGTTCCAGCCGCCCGACGGACCCGGCCCGCCG 138094 || || | || | |||||| | || |||| || || | |||| Sbjct 127326 GGGTTC----------TCCCAC-GCGCCCACGTC-GCGGCCCCTGGG---CGTGCGGCCG 127282 Query 138095 TGCGGGACGGCGTGCTCGATCAGCGAGCGAAGCTTGGACAGGCTGTCGGGGAGGTCCGAC 138154 || || || ||| |||||| |||||| ||| | |||| |||| || |||||| | Sbjct 127281 TGAGGCACCGCGGCTTCGATCGCCGAGCGGAGCGGCGCCAGGTTGTCCGGCAGGTCCTCC 127222 Query 138155 GCGGTCAGGCTGGTGCGGACCGCCATCATGCCGCAGCCGATGTCGACGCCGACGGCGGCC 138214 ||| ||| |||| | |||||||| |||||||||||||| || ||||| |||||| Sbjct 127221 GCGCGCAGCGTGGTCTTGCAGGCCATCATCCCGCAGCCGATGTCCACCCCGACCGCGGCC 127162 Query 138215 GGGATGATCGC 138225 |||||||| || Sbjct 127161 GGGATGATTGC 127151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 709702393159200