Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_019411.1 Length=219216 Score E Sequences producing significant alignments: (Bits) Value seq1612 378 1e-99 >seq1612 Length=217819 Score = 378 bits (418), Expect = 1e-99 Identities = 701/1031 (68%), Gaps = 33/1031 (3%) Strand=Plus/Minus Query 135971 CCCTTCACGCAGAGGACTTGCTTGAGGGTGTGGACGATGTCCACGAGGTCCTTCTGGGCC 136030 ||||||||||| | || |||||||| ||||| |||| ||||| ||||| | ||| ||| Sbjct 128160 CCCTTCACGCACACCACCTGCTTGAGCGTGTGCACGACCTCCACCAGGTCTTGCTGAGCC 128101 Query 136031 TCCATGACCGCGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACGCCGGCGTCC 136090 |||| |||||||| ||| | ||||| Sbjct 128100 GCCATCACCGCGTCGATGTCCTTGTAGGCCATCGGGATCTCGTCGATGACGTCCTCGTCC 128041 Query 136091 TTGCGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCCTCCAGGGTGAAG-GTCGCCTT 136149 |||||||||||||| || ||||| ||| | |||||||| ||| ||||| | ||| || Sbjct 128040 TTGCGGCACTCCACCCCTTCGGTCGCCGCGCGCTGGTCCTTCAGCGTGAAACGACGC-TT 127982 Query 136150 GGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGCGAGCACGAGCAGAACGAGTCCGC 136209 ||| | ||| || |||||| ||||| || ||||||||||| | ||| ||||| Sbjct 127981 GGCTTCGGTACGGCTCATCGTGCGGCCGGCCCCGTGCGAGCAGCTGTCGAAGCTCTCCGC 127922 Query 136210 GTTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATCCCGAA 136269 ||||||||||||||||||||||||| || ||||| |||||| |||||||| | Sbjct 127921 GTTGCCCTTGCCGCGCACGATGTAGCTGCGCGCGCCCATGCTGCCGGGAATGATCCCCAT 127862 Query 136270 CTGGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTG 136329 |||| ||| || ||| |||||||||||||||||||||||| || || | ||||||| Sbjct 127861 CTGGCCCTGCTTCGCGCTCACCGCGCCCTTGCGGGTCACGAACACGTCCTGGCCGAAGTG 127802 Query 136330 GAATTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCTTGAACGG 136389 | |||||||| |||||||||||||||||||||||||| || ||| | || |||||| Sbjct 127801 GGTCTCCTTCTGCACGTAGTTGTGGTGGCAGTTCACCGCCTCGATGTGGGCCTCGAACGG 127742 Query 136390 C--GGCAGGCCCGACGCTCGCATGGCCTCCAGGACCCGGACCATCATCATCTCGCGGTTG 136447 | ||| | | ||||| || | | ||| ||| |||||||| |||||| ||| Sbjct 127741 CTTGGCGATCACCTTCCTCGC--CGCGCCGATGACGCGGCGCATCATCAGCTCGCGATTG 127684 Query 136448 ATCCGCGCGAAGTCCTGGCCCCAGGCGACGGCTTCCACGTAGTCGTGGAACTCCGGCTCG 136507 || ||||| | ||| ||||| || || |||||||||| ||| | | | || Sbjct 127683 GTCTCGGCGAACTTCTGCGCCCAGCTCACCGCGCGCACGTAGTCGCCGAAGTACTTCGCG 127624 Query 136508 CCTTCGCAGAGCCAAGCAAGGTCCTTGTCCAGCGGCTTACGCCCGTCACGGCGCAGCATC 136567 ||||| || | || || | | | || || | || ||| | | || || || Sbjct 127623 CCTTCCTCGAAGTAGGCGAGATTCGTATCGGGCAGGTT-GGCCTGATGCTGCATCGCGTC 127565 Query 136568 ATCTCCTTGGCCTTCTCGATGAAGATGCGGCCGATGGTGTTGCCGACGCCGCGCGAGCCC 136627 || ||| ||| ||||||||| || |||||| | |||||| ||||||||||||||| Sbjct 127564 --CTTCTTCGCCAGCTCGATGAACATCGTGCCGATCGCGTTGCCCACGCCGCGCGAGCCC 127507 Query 136628 GAGTGGAGCATCACCCAGACGCGCTGGTCCTCGTCGAGGCAGACCTCGATGAAGTGGTTG 136687 || || ||||| | ||| ||| |||| || |||||||||||||||||||||||| Sbjct 127506 GAATGCAGCATGAACCACACGAAGCCCCCCTCATCCAGGCAGACCTCGATGAAGTGGTTG 127447 Query 136688 CCGCCGCCCAGGGTGCCCAGTTGGACCACGCTGTTGGCGTTCTTCAGCGCCGGGTACTTC 136747 || || || |||||||| || | |||| | |||| ||||| || || | Sbjct 127446 CCCGTCCCGAGCGTGCCCAGGTGCTTGTGGTTGTTCGTGTTCCTCAGCTTGGGATAGTCG 127387 Query 136748 TCGCAGAGCTTGTCGAACCGCGCCTC----CAGGCCC-----GAGTCGACCCACTTGCGC 136798 ||| |||| | ||| | ||| | ||||| | |||||| || | || Sbjct 127386 CGGCACAGCTCGGTGAAGTCGGACTCGAGTCCGGCCCAGGCGGCATCGACCATCTCGGGC 127327 Query 136799 AGGATCGAGTTGGGGATGCCGCTGCGCCCGTTCCAGCCGCCCGACGGACCCGGCCCGCCG 136858 || || | || | |||||| | || |||| || || | |||| Sbjct 127326 GGGTTC----------TCCCAC-GCGCCCACGTC-GCGGCCCCTGGG---CGTGCGGCCG 127282 Query 136859 TGCGGGACGGCGTGCTCGATCAGCGAGCGAAGCTTGGCGAGGCTGTCGGGAAGGTCCGAC 136918 || || || ||| |||||| |||||| ||| || ||| |||| || |||||| | Sbjct 127281 TGAGGCACCGCGGCTTCGATCGCCGAGCGGAGCGGCGCCAGGTTGTCCGGCAGGTCCTCC 127222 Query 136919 GCGGTCAGGCTGGTGCGGACCGCCATCATGCCGCAGCCGATGTCGACGCCGACGGCGGCC 136978 ||| ||| |||| | |||||||| |||||||||||||| || ||||| |||||| Sbjct 127221 GCGCGCAGCGTGGTCTTGCAGGCCATCATCCCGCAGCCGATGTCCACCCCGACCGCGGCC 127162 Query 136979 GGGATGATCGC 136989 |||||||| || Sbjct 127161 GGGATGATTGC 127151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 701344219358400