Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq100 535 5e-147 >seq100 Length=112360 Score = 535 bits (592), Expect = 5e-147 Identities = 686/943 (73%), Gaps = 2/943 (0%) Strand=Plus/Plus Query 162541 GGTTGGTTCGGTGTCTTGATGATCCCTT-GCTTGCTCGCAGCAGCAACTTGCTTCATCAT 162599 || |||||||| || ||||||| ||| |||| | |||| | || || ||||| || Sbjct 40194 GGATGGTTCGGAGTTGTGATGATTCCTACGCTTT-TAACAGCTACTACATGTTTCATTAT 40252 Query 162600 TGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTC 162659 | || || ||||| |||||||| || || ||||| || | || || || || || || Sbjct 40253 CGGTTTTATCGCAGCTCCTCCAGTAGACATTGATGGAATTCGCGAGCCAGTAGCTGGATC 40312 Query 162660 ACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGG 162719 || | ||||| |||||||| || | || | | ||||||||||||| || ||||| Sbjct 40313 CCTATTATATGGAAACAACATTATTACAGGATCAATTATTCCTAGTTCAAACGCAATTGG 40372 Query 162720 TCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGG 162779 | |||| || |||||||| |||||||| || || ||||||| ||||| ||||| ||||| Sbjct 40373 TGTTCATTTTTATCCTATATGGGAAGCTGCTTCTATTGATGAATGGTTATATAACGGTGG 40432 Query 162780 ACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCA 162839 || | ||||| |||| || |||||| | | || | | || | |||||| | Sbjct 40433 TCCATATCAACTGATAGTATTACACTTCTTAACAGGTGTAGCTTGTTATTTAGGTCGTGA 40492 Query 162840 GTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACC 162899 ||||||| | | |||||||| ||||| |||||||| | |||||| | || || || Sbjct 40493 GTGGGAATTAAGCTTTCGCTTAGGAATGCGCCCTTGGATTTTTGTTGCCTTTTCCGCTCC 40552 Query 162900 AGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGA 162959 |||| |||||||| ||||| ||||| | ||||| | || ||||| ||| ||||| Sbjct 40553 AGTAGCTGCAGCAACAGCTGTATTCTTAATTTATCCGATAGGACAAGGAAGTTTTTCTGA 40612 Query 162960 CGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCA 163019 | |||||| | || ||||| || |||||||||| |||||| || |||||||| ||||| Sbjct 40613 TGGTATGCCTTTAGGGATTTCAGGGACTTTTAACTTCATGTTAGTTTTCCAAGCCGAGCA 40672 Query 163020 CAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACT 163079 ||||| ||||||| || || || ||| ||| || || || || || || |||||| | Sbjct 40673 TAACATATTAATGCATCCATTTCACATGGCTGGTGTAGCTGGAGTTTTTGGAGGTTCATT 40732 Query 163080 CTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCA 163139 ||| ||| |||||||| ||| | || ||||| || |||| | |||||| |||| Sbjct 40733 ATTTTCTGCAATGCACGGATCTTTAGTAACTTCATCAATTATTCGTGAAACTTCTGAAAG 40792 Query 163140 AGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGC 163199 || |||| || || || || || || |||||||||||||| || || || |||||||| Sbjct 40793 CGAATCACCAAATTATGGATACAAATTTGGACAAGAAGAAGAAACATATAATATTGTTGC 40852 Query 163200 TGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTC 163259 |||||| ||||| || || | || || || || || ||| ||| || ||||||||||| Sbjct 40853 TGCTCACGGATATTTCGGAAGATTAATTTTTCAATACGCAAGTTTTAATAACTCACGTTC 40912 Query 163260 ACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGT 163319 | | ||||||||| | ||||||| || || || | || ||||| |||||| | || | Sbjct 40913 ATTACACTTCTTCTTAGCTGCATGGCCAGTAGTTGGAATTTGGTTAACTGCATTAGGAAT 40972 Query 163320 GTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACGCAGG 163379 || ||||| || ||| | ||||| || ||||| || ||||| | |||| Sbjct 40973 TAGTACAATGGCCTTTAACTTAAACGGATTTAACTTTAATCAATCGATTATTGATAGCCA 41032 Query 163380 TGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGT 163439 || | ||| ||| |||||||||||||| | ||||||||| ||||| || ||||| Sbjct 41033 AGGAAGAGTAATTAACACTTGGGCAGATATTGTAAACAGAGCAAATCTTGGAATCGAAGT 41092 Query 163440 TATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCT 163482 ||||| || ||||||||||| ||||||||| | || |||||| Sbjct 41093 AATGCATGAACGTAATGCTCATAACTTCCCATTAGATCTTGCT 41135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553069832142600