Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq100 500 1e-136 >seq100 Length=112360 Score = 500 bits (554), Expect = 1e-136 Identities = 676/942 (72%), Gaps = 0/942 (0%) Strand=Plus/Plus Query 162934 GGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACTATCTGTTTCATCGTC 162993 || |||||||| || |||||||||| || || || |||| |||| |||||||| || Sbjct 40194 GGATGGTTCGGAGTTGTGATGATTCCTACGCTTTTAACAGCTACTACATGTTTCATTATC 40253 Query 162994 GCCTTCGTCGCTGCTCCCCCTGTGGACATTGACGGCATCCGTGAGCCCGTCGCTGGTTCA 163053 | || |||| ||||| || || |||||||| || || || ||||| || ||||| || Sbjct 40254 GGTTTTATCGCAGCTCCTCCAGTAGACATTGATGGAATTCGCGAGCCAGTAGCTGGATCC 40313 Query 163054 CTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGT 163113 || | ||||| |||||||| || | || || || |||| ||| |||||||||||| Sbjct 40314 CTATTATATGGAAACAACATTATTACAGGATCAATTATTCCTAGTTCAAACGCAATTGGT 40373 Query 163114 CTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGT 163173 |||| || ||||| || |||||||| || || ||||||| ||| | |||||||||||| Sbjct 40374 GTTCATTTTTATCCTATATGGGAAGCTGCTTCTATTGATGAATGGTTATATAACGGTGGT 40433 Query 163174 CCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAA 163233 || | ||||| |||| || |||||| | | || | | ||| | || ||||| Sbjct 40434 CCATATCAACTGATAGTATTACACTTCTTAACAGGTGTAGCTTGTTATTTAGGTCGTGAG 40493 Query 163234 TGGGAACTTTCATATCGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCT 163293 |||||| | | ||||||||| |||||||| ||||| | ||| || | || || || Sbjct 40494 TGGGAATTAAGCTTTCGCTTAGGAATGCGCCCTTGGATTTTTGTTGCCTTTTCCGCTCCA 40553 Query 163294 GTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGAC 163353 || || |||||| | || || ||| | | ||||| | || ||||| ||| ||||| Sbjct 40554 GTAGCTGCAGCAACAGCTGTATTCTTAATTTATCCGATAGGACAAGGAAGTTTTTCTGAT 40613 Query 163354 GCAATGCCACTTGGCATCTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCAC 163413 | ||||| | || || || || || || |||| |||| | || |||||||| ||||| Sbjct 40614 GGTATGCCTTTAGGGATTTCAGGGACTTTTAACTTCATGTTAGTTTTCCAAGCCGAGCAT 40673 Query 163414 AACATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCTGGTGTCTTCGGTGGATCACTC 163473 ||||| | ||||| || || || ||| || || ||||| || || || || ||| | Sbjct 40674 AACATATTAATGCATCCATTTCACATGGCTGGTGTAGCTGGAGTTTTTGGAGGTTCATTA 40733 Query 163474 TTCTCGGCAATGCATGGCAGTCTTGTTACCTCTTCACTCGTCCGTGAGACGACTGAAACT 163533 || || |||||||| || | | || || || ||| | | ||||| || |||||| Sbjct 40734 TTTTCTGCAATGCACGGATCTTTAGTAACTTCATCAATTATTCGTGAAACTTCTGAAAGC 40793 Query 163534 GAGTCACAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACATACAACATCGTTGCA 163593 || |||| ||| ||||| ||||| ||||| ||||||||||| ||||| || || ||||| Sbjct 40794 GAATCACCAAATTATGGATACAAATTTGGACAAGAAGAAGAAACATATAATATTGTTGCT 40853 Query 163594 GCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACAGCAGAAGT 163653 || || || || ||||| | || || || ||||| ||| || || ||| | Sbjct 40854 GCTCACGGATATTTCGGAAGATTAATTTTTCAATACGCAAGTTTTAATAACTCACGTTCA 40913 Query 163654 CTTCACTTCTTCCTGGCAGCATGGCCTGTCGTCGGAATCTGGTTTACTGCACTGGGCGTA 163713 | ||||||||| | || |||||||| || || ||||| ||||| |||||| | || | Sbjct 40914 TTACACTTCTTCTTAGCTGCATGGCCAGTAGTTGGAATTTGGTTAACTGCATTAGGAATT 40973 Query 163714 AGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAG 163773 || || ||||| || ||| | ||||| || ||||| || || || || ||||| | || Sbjct 40974 AGTACAATGGCCTTTAACTTAAACGGATTTAACTTTAATCAATCGATTATTGATAGCCAA 41033 Query 163774 GGTCGTGTGCTCAACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGTATGGAAGTT 163833 || | || | |||||||||||||| | | ||| | || ||| || || ||||| Sbjct 41034 GGAAGAGTAATTAACACTTGGGCAGATATTGTAAACAGAGCAAATCTTGGAATCGAAGTA 41093 Query 163834 ATGCATGAGCGTAACGCACACAACTTCCCACTCGATCTTGCT 163875 |||||||| ||||| || || ||||||||| | ||||||||| Sbjct 41094 ATGCATGAACGTAATGCTCATAACTTCCCATTAGATCTTGCT 41135 Score = 410 bits (454), Expect = 1e-109 Identities = 702/1013 (69%), Gaps = 4/1013 (0%) Strand=Plus/Plus Query 164617 TAGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGATTACTACTTC 164676 ||||||||||||| ||| ||| | ||||| ||||| || |||||||| ||| || | Sbjct 28584 TAGATGACTGGCTAAAAAAAGACAGATTTGTATTTGTAGGATGGTCTGGTTTATTATTAT 28643 Query 164677 TTCCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTT 164736 |||| || ||| | || | || || ||| ||||||| | | ||||| || || Sbjct 28644 TTCCGTGCGCGTATTTAGCTCTAGGAGGATGGTTTACTGGAATCACATTTGTTACCTCTT 28703 Query 164737 GGTACACCCATGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTCACAGCAGCTG 164796 |||| |||||||| | ||| |||| | | |||||| ||| ||| | || || |||| Sbjct 28704 GGTATACCCATGGCTTAGCTAGCTCCTTTTTAGAAGGTTGTAATTTTTTAACGGCTGCTG 28763 Query 164797 TCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 164856 | || || || ||| || |||||| |||||| | ||||| | ||||| || || | | Sbjct 28764 TTTCAACACCAGCTAATAGTATGGGACATTCTTTACTTCTTTTATGGGGACCAGAAGCGC 28823 Query 164857 AGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACG 164916 | || ||||| |||| || |||| || || |||| || || || | |||| Sbjct 28824 AAGGAAATTTTTCTGTATGGTTTAAAATTGGAGGTCTTTGGACATTTGTTGCCTTACACG 28883 Query 164917 GTGCCTTCGCCCTAATTGGTTTCATGC-TCCGCCAGTTTGAGCTGGCACGTCTCATTGGT 164975 | || || || |||||||| || ||| | || || ||||| | || || | | || Sbjct 28884 GAGCTTTTGCACTAATTGGATT-TTGCTTACGACAATTTGAAATTGCTCGATTAGTAGGA 28942 Query 164976 ATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTC 165035 || || |||||||||||| | || || || | || || || ||||||| ||| || Sbjct 28943 ATTCGACCTTACAATGCTTTAGCATTTTCAGCACCGATCGCCATTTTTGTTTCCGTTTTT 29002 Query 165036 CTTATCTACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCA 165095 | | || || | || || | || |||||||| || || ||||| || |||||| Sbjct 29003 TTACTTTATCCTTTAGGGCAAGCAAGCTGGTTTTTTGCACCAAGTTTTGGTGTTGCAGCA 29062 Query 165096 ATCTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCAT 165155 || ||| |||| | | ||| | ||||||||||| || ||||| | || || |||||| Sbjct 29063 ATTTTTCGATTTTTACTATTCTTACAAGGATTCCATAATTGGACATTAAATCCATTCCAT 29122 Query 165156 ATGATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAGTCACA 165215 |||||||| ||||| || | || |||| || || |||| ||| |||||||| | || Sbjct 29123 ATGATGGGAGTTGCTGGAGTATTAGGAGCTGCGTTACTATGTGCAATTCATGGTGCTACT 29182 Query 165216 GTTGAAAATACATTATACGAGGATGGAGA-GCAGGCAAATACCTTTAAGGCGTTTGATTC 165274 ||||||||||| | || || |||||||| ||| |||||||| |||| || ||| | Sbjct 29183 GTTGAAAATACTCTTTATGAAGATGGAGATGCA-GCAAATACATTTAGAGCCTTTACCCC 29241 Query 165275 GACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTT 165334 || || ||||| || ||||| ||||| || || ||| | || ||||| || || || Sbjct 29242 TACTCAATCGGAAGAAACATATTCCATGGTTACAGCCAACAGATTTTGGTCACAAATTTT 29301 Query 165335 CGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTAT 165394 || | || ||||| || || | ||| | || ||||| ||| | ||||| ||||| | Sbjct 29302 TGGAGTAGCTTTTTCCAATAAAAGATGGTTACACTTTTTTATGCTATTTGTTCCTGTAAC 29361 Query 165395 GGGTCTTTGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGA 165454 ||| | ||| || | | || || ||| | || ||||| | ||| | || || || || Sbjct 29362 CGGTTTATGGGCAAGCGCAATAGGAATTGTAGGACTTGCATTAAACTTACGCGCCTATGA 29421 Query 165455 TTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAA 165514 || | || || | |||||||||||||||| ||||| || || ||||| || || Sbjct 29422 CTTTATTTCGCAAGAATTACGAGCAGCAGAAGATCCGGAATTCGAAACATTCTATACAAA 29481 Query 165515 AAACATCCTATTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGA 165574 ||| || | || ||||||||| || | ||| |||| | || || || ||||| Sbjct 29482 AAATATTATTTTAAATGAAGGAATAAGATTATGGATGGCTGCACAAGACCAGCCACATGA 29541 Query 165575 AAACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAATAAA 165627 ||| | ||| || |||||||| ||||| || | || ||||| |||| || || Sbjct 29542 AAATTATATATTTCCAGAAGAGGTATTACCACGTGGAAACGCGCTTTGATGAA 29594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563194358140200