Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq368 163 5e-35 seq1526 129 1e-24 >seq368 Length=262043 Score = 163 bits (180), Expect = 5e-35 Identities = 372/553 (67%), Gaps = 14/553 (3%) Strand=Plus/Plus Query 48130 GCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAG 48189 ||| ||||||||| |||||| || ||||||||||| || ||| |||| || |||| || Sbjct 28286 GCACGCAAAGTCCGTGTGCATACCCTCGTCCCGGCTAATAAGCTCGTTTGAAAAGCTTAG 28345 Query 48190 ACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAA 48249 ||||||||| | || | || |||||||| || || | ||| ||||||||||| || Sbjct 28346 ACCAGGCATTAAACCGCGCTTCTTGAGCCAAAAGATGGAGCAGAATGAGCCAGAGAAAAA 28405 Query 48250 GATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCG-TTCTTGTCTG 48308 ||||| || ||||| || || || |||| ||| | |||| | | || | Sbjct 28406 AATGCCTTCAACTGCAGCAAAGGCCAAAAGCCGTTCTGGATAGGAAGAGACCCGTGGAT- 28464 Query 48309 AGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCC 48368 | ||| || ||||||| || || || ||| ||| || || ||||| || || | Sbjct 28465 CGCACCACTTCAGAGCCCAGTGCGCTTTTTTGGTGACGCAAGGGATAGTCTCGATAGCAC 28524 Query 48369 G--GAAGA-GCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTG 48422 | | ||| | | ||| |||| ||||| | ||| || | | | ||| | Sbjct 28525 GTAGTAGATGGTCCTT---CTCAATCGCGTCTTTGATATACGTGTCAATCAAAAGC---G 28578 Query 48423 CGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCT 48482 ||||| || ||||| | |||||| || ||||| || |||||||| ||| | |||| Sbjct 28579 AGTACACTTCCGAGTGTATATTCTCGATTGCGATTTGAAACCCGTAAAAGCAGCGAGCCT 28638 Query 48483 CAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTG 48542 | |||||||||||| || || || ||||| ||||| || || || || Sbjct 28639 CTGGCACCTGCACTTCGTTGCTAAAATTCATGGCTAGATTTTCATTCACGATGCCGTCAC 28698 Query 48543 AAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCAT 48602 |||||||||||| || || ||||| |||| ||||| |||||||||| ||||| | Sbjct 28699 TAGCAGCAAAGAAAGCGAGCACATGCTTAATGAAATAACGCTCGTTGTCCGTGAGGCTAG 28758 Query 48603 TCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTG 48662 ||| | | | || | |||| || | ||| || | |||||||| || || | Sbjct 28759 CCCAATCTTTCAGATCGTGCACCAGATCGAGTTCCTCAGCTGTCCAGAAAGAAGCTTCAG 28818 Query 48663 CTTTTTTGTACAT 48675 |||| |||||||| Sbjct 28819 CTTTCTTGTACAT 28831 >seq1526 Length=132622 Score = 129 bits (142), Expect = 1e-24 Identities = 472/730 (65%), Gaps = 22/730 (3%) Strand=Plus/Plus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 ||||| || || || | || ||||||||||| ||||| || | ||| || || ||| Sbjct 118398 TGGTACTCACCAACCTTCTTTTCAAAGAAGTTAGTCTTTCCTTGCAAGGAAATCAAGTCC 118457 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTC---CAGC 47956 ||||| ||| || ||| | || || | | | ||| | | | | || | Sbjct 118458 ATGAAATCGAAAGGATTGTCTACATTGTAAAA---TTTGGGGCACTGCAGGGCAACCAAC 118514 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 | | |||| || || | || ||||| | ||||||| | | |||||||| || | Sbjct 118515 AAGCGATCAGCAACAAATTCAATGTACTGGCACATGAGAGCGCAATTCATGCCAATCAAA 118574 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 | |||||||| |||| || || || |||| || |||| || |||||| | || Sbjct 118575 GCAACGGGCAAGGCCTCCGTCAGGAATTCCTGTTCAATCTTGACAGCTTCCGTAATGATG 118634 Query 48077 TGC-TTAACGCGGGACTCTGAGGGTT---TGTTGCGCAGGTGCTTGGCATAGAGCATGCA 48132 || ||| | || | || || || ||| |||| |||| || | | || || Sbjct 118635 TGAGTTATAGTGGCA-TCAGAAGGACGAGTGTGACGCAAGTGCCTGA---ATAACAAACA 118690 Query 48133 GGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACC 48192 |||||| || | || | |||||||| |||||||| || | ||||||||| | ||| Sbjct 118691 GGCAAAATCACAATGAAGACCTTCGTCACGGCTGATTAGTTCATTGGAGAAGGTCAAACC 118750 Query 48193 AGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGAT 48252 ||||| | ||| | || || | ||||||||| || || || || || || |||||||| Sbjct 118751 GGGCATCAACCCGCGCTTCTTCAACCAGAAAATGGCAGCAAATGAACCGGAAAAGAAGAT 118810 Query 48253 GCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTG-TCTGAGA 48311 || ||||| || || || || || | ||||| ||| | || ||| | | | Sbjct 118811 ACCTTCCACGGCAGCAAAAGCAACAAGGCGTTCTCCAAAACA-GCTAGTTTGATTTTCAA 118869 Query 48312 TCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGA 48371 |||| | ||||||||| ||||||| | || || || || || ||||| || Sbjct 118870 TCCAACGCATAGCCCAGTCTCCCTTCTTGCGAACACAAGGGATGGTGTCAATGGCATTGA 118929 Query 48372 AGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAG---TGAGCAGCTTTGCGTACA 48428 | || || | |||| ||| ||| || |||||| |||| || | ||||| Sbjct 118930 AAAGGAATTTACGCTCAACTGGGTCACGAATGTAGGTATCAATGAGGAGA---GAGTACA 118986 Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 | |||| ||| | || || || ||| ||||||||||| ||| | || || | Sbjct 118987 TTTCAGCGTGAATGTTTTCAATCATGATTTGGAACCCGTAAAAGCAACGAGCTTCTGGAA 119046 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 | || |||||| | ||| | | || || |||||||| || ||||| || |||| Sbjct 119047 CTTGAACTTCTTGTGCGAAACGAGTAACCAAGTTTTCATTGACAATACCATCAGAGGCAG 119106 Query 48549 CAAAGAAGGC 48558 ||||||| || Sbjct 119107 CAAAGAAAGC 119116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931507590393600