Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq368 140 6e-28 seq1526 113 8e-20 seq1301 105 1e-17 seq1342 84.2 4e-11 >seq368 Length=262043 Score = 140 bits (154), Expect = 6e-28 Identities = 373/563 (66%), Gaps = 18/563 (3%) Strand=Plus/Minus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||| ||||||||||||| ||| || || |||||| || || || | ||||||| Sbjct 28837 TGGCAGATGTACAAGAAAGCTGAAGCTTCTTTCTGGACAGCTGAGGAACTCGATCTGGTG 28778 Query 25540 AAGGACATGGACGGCTGG--TACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTACG 25597 | || || | | ||| || ||| | | |||||| |||| | ||| | | Sbjct 28777 CACGATCTGAAAGATTGGGCTAGCCTCA--CGGACAACGAGCGTTATTTCATTAAGCATG 28720 Query 25598 TGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCA 25657 || | || |||||||| || ||| || || ||||| || ||||| | || || | Sbjct 28719 TGCTCGCTTTCTTTGCTGCTAGTGACGGCATCGTGAATGAAAATCTAGCCATGAATTTTA 28660 Query 25658 CCAGGGAAGTGCAGTACGTG---GAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCG 25714 || ||||||||| ||| ||||| || || ||||| || || || || |||| Sbjct 28659 GCAACGAAGTGCAG---GTGCCAGAGGCTCGCTGCTTTTACGGGTTTCAAATCGCAATCG 28603 Query 25715 AAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTCG 25771 | ||| | ||||| || ||||| | |||| |||| ||||| || | ||||| Sbjct 28602 AGAATATACACTCGGAAGTGTACTC---GCTTTTGATTGACACGTATATCAAAGACGCGA 28546 Query 25772 CCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGC 25831 |||| || | || | |||| |||||| || || || ||| | || |||| Sbjct 28545 TTGAGAAGGACCATCTACTACGTGCTATCGAGACTATCCCTTGCGTCACCAAAAAAGCGC 28486 Query 25832 GGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891 ||||| |||||||| | | | | | || | | | || ||||| | |||| Sbjct 28485 ACTGGGCTCTGAAGTGGTGCGATCCACGGGTCTCTTCCTATCCAGAACGGCTTTTGGCCT 28426 Query 25892 TTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAG 25950 ||||||| || || ||||| |||||| || || || ||| ||||||| ||||||||| Sbjct 28425 TTGCTGCAGTTGAAGGCATTTTTTTCTCTGGCTCATTCTGCT-CCATCTTTTGGCTCAAG 28367 Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010 || || ||||| || || |||||| |||||||| || ||| ||||||||||| Sbjct 28366 AAGCGCGGTTTAATGCCTGGTCTAAGCTTTTCAAACGAGCTTATTAGCCGGGACGAGGGT 28307 Query 26011 CTCCACAGAGATTTTGCCTGCCT 26033 | |||| || ||||| ||||| Sbjct 28306 ATGCACACGGACTTTGCGTGCCT 28284 >seq1526 Length=132622 Score = 113 bits (124), Expect = 8e-20 Identities = 302/462 (65%), Gaps = 18/462 (4%) Strand=Plus/Minus Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929 ||||| || || || || || |||||||| ||||| || ||||| || |||||| ||| Sbjct 118849 TTTGGAGAACGCCTTGTTGCTTTTGCTGCCGTGGAAGGTATCTTCTTTTCCGGTTCATTT 118790 Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAG 25989 || ||||| |||||| | ||| || ||| |||||||| || ||| ||||| || Sbjct 118789 GCTGCCATTTTCTGGTTGAAGAAGCGCGGGTTGATGCCCGGTTTGACCTTCTCCAATGAA 118730 Query 25990 CTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCAC 26049 || |||||| | ||||| ||||| || | ||||||||||| || | | || | ||| Sbjct 118729 CTAATCAGCCGTGACGAAGGTCTTCATTGTGATTTTGCCTGTTTGTTATTCA---GGCAC 118673 Query 26050 TTGCTCCACA---AACCTTCTCAAGAGACCGT--CTACAGTATCATCAAAGAGGCTGTGG 26104 |||| |||| |||||| | | || | || || ||||| | || ||||| Sbjct 118672 TTGCGTCACACTCGTCCTTCTGATGCCACTATAACT-CA-CATCATTACGGAAGCTGTCA 118615 Query 26105 AGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACA 26164 |||| || |||| || | | |||||||| | Sbjct 118614 AGATTGAACAGGAATTCCTGACGGAGGCCTTGCCCGTTGCTTTGATTGGCATGAATTGCG 118555 Query 26165 GACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTG--TGCCAGCTGGGACT 26222 |||||| |||| |||||||| | ||| || || | || || |||| ||| Sbjct 118554 CTCTCATGTGCCAGTACATTGAATTTGTTGCTGATCGCTTGTTGGTTGCC--CTGCAGTG 118497 Query 26223 CGCCAGACTCTACA--GTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAA 26280 | ||| | | |||| ||| | || || ||||| || ||||| || || ||| || Sbjct 118496 CCCCAAATTTTACAATGTAGAC--AATCCTTTCGATTTCATGGACTTGATTTCCTTGCAA 118439 Query 26281 GGGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCAA 26322 || ||||| |||||||||||||||| ||| || || || ||| Sbjct 118438 GGAAAGACTAACTTCTTTGAAAAGAAGGTTGGTGAGTACCAA 118397 >seq1301 Length=515170 Score = 105 bits (116), Expect = 1e-17 Identities = 217/318 (68%), Gaps = 6/318 (2%) Strand=Plus/Plus Query 222105 TGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGG 222164 |||| ||| ||| ||||||||| ||||||| ||||||||||||||| |||| ||||||| Sbjct 332756 TGTTCTTCTTCAAATCCAAAAAGTCAAAAACGTCAGCGTGCCACGGTTCCAAGTAGACGG 332815 Query 222165 CCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGA 222224 | | ||| || || ||||| || ||||| ||||| || | || ||| | | Sbjct 332816 CAAAAGCACCCGGACGCTTATTACCACCTTGATCAACGTAACGAGCCGTGTTATTGTAAA 332875 Query 222225 TGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGC 222284 ||||| | || || || || |||||| |||| || ||||| |||||||| ||| Sbjct 332876 CACGAAGCATGGGAACAAGACCATTGGATTGACCATTCGTGCCAGAAATGTACGAACCAG 332935 Query 222285 CGGCCCTCAGGTTACTGGCAG-ACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCG 222343 | || | | ||| || | || || |||||||| || ||| || |||| || Sbjct 332936 CAGCACGAATGTT-GTGAATGTTCAAACCAATACCACCAGCAGATTTGGAAATCAAAGCA 332994 Query 222344 CAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGT--TCAGCAGAA 222401 || |||| | ||| || || || || || ||||| || ||| | ||| || | Sbjct 332995 CAAGTCTTTAAAGTTTCATAAATACCATCAATCGAGTCATC--AGACATCGTCAACAAGA 333052 Query 222402 AACAAGACGACATCTGAG 222419 | ||||| |||| |||| Sbjct 333053 AGCAAGAAGACAGTTGAG 333070 >seq1342 Length=132421 Score = 84.2 bits (92), Expect = 4e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 221998 GGGACACATCAGACTCCA-GTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGA 222056 |||||| | |||||||| |||| ||| ||| || | || ||| ||||| || |||| Sbjct 2272 GGGACAAAAGAGACTCCACGTGCCA-TTGGCTTCCACGCGCTTCATAAAGAGATCTGGGA 2214 Query 222057 TCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCA 222116 ||||| || ||| | ||| | | || ||| ||| ||||| |||||||| || Sbjct 2213 CCCACAAGGCAAAAAACAAATCCCGAGCACGATGCAACTCGTTGCCGTGGTTTTTCCGCA 2154 Query 222117 GATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGG 222176 || | ||| ||||| | ||||||||||| ||||| ||||||| ||| | | ||| Sbjct 2153 ACTCTAGAAATTCAAACACATCAGCGTGCCAGGGCTCTAGATAGATGGCAAACGAGCCTT 2094 Query 222177 GTCGCTTGTTGCCACCCTGATCCAC 222201 || || |||||| ||||| || Sbjct 2093 TGCGTTTCCCGCCACCTTGATCGAC 2069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928819663137600