Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq100 484 7e-132 >seq100 Length=112360 Score = 484 bits (536), Expect = 7e-132 Identities = 672/941 (71%), Gaps = 0/941 (0%) Strand=Plus/Plus Query 8290 GGCTGGTTTGGCGTTCTCATGATCCCAACCCTTCTTGCCGCTACAATTTGCTTCATTACC 8349 || ||||| || ||| | ||||| || || ||| | | ||||| | || ||||||| | Sbjct 40194 GGATGGTTCGGAGTTGTGATGATTCCTACGCTTTTAACAGCTACTACATGTTTCATTATC 40253 Query 8350 GCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATCT 8409 | || | || |||||||| || ||||| || || || ||||| ||||| |||||||| Sbjct 40254 GGTTTTATCGCAGCTCCTCCAGTAGACATTGATGGAATTCGCGAGCCAGTAGCTGGATCC 40313 Query 8410 CTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGGC 8469 || | || || |||||||| || | || || || |||| || || ||||||||||| Sbjct 40314 CTATTATATGGAAACAACATTATTACAGGATCAATTATTCCTAGTTCAAACGCAATTGGT 40373 Query 8470 CTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGGT 8529 | || || || || || |||||||| |||||| ||||||| ||| | || ||||||||| Sbjct 40374 GTTCATTTTTATCCTATATGGGAAGCTGCTTCTATTGATGAATGGTTATATAACGGTGGT 40433 Query 8530 CCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGTGAA 8589 || || || || |||| || |||||| | || || | |||| | |||||||| Sbjct 40434 CCATATCAACTGATAGTATTACACTTCTTAACAGGTGTAGCTTGTTATTTAGGTCGTGAG 40493 Query 8590 TGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCCT 8649 |||||| | | ||| | || ||||| |||||||| | |||||| | || ||||| Sbjct 40494 TGGGAATTAAGCTTTCGCTTAGGAATGCGCCCTTGGATTTTTGTTGCCTTTTCCGCTCCA 40553 Query 8650 GTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGAT 8709 || || || || | ||||||||| | | ||||| | || ||||| || |||||| Sbjct 40554 GTAGCTGCAGCAACAGCTGTATTCTTAATTTATCCGATAGGACAAGGAAGTTTTTCTGAT 40613 Query 8710 GGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCAC 8769 ||||||||| | || || || || || || |||| ||| | || ||||| || ||||| Sbjct 40614 GGTATGCCTTTAGGGATTTCAGGGACTTTTAACTTCATGTTAGTTTTCCAAGCCGAGCAT 40673 Query 8770 AACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCTC 8829 ||||| | ||||| || || |||||| |||||| ||||| || || || || || | Sbjct 40674 AACATATTAATGCATCCATTTCACATGGCTGGTGTAGCTGGAGTTTTTGGAGGTTCATTA 40733 Query 8830 TTTTCCGCAATGCATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAACC 8889 ||||| |||||||| || || | || ||||| || | ||||||| || | |||| | Sbjct 40734 TTTTCTGCAATGCACGGATCTTTAGTAACTTCATCAATTATTCGTGAAACTTCTGAAAGC 40793 Query 8890 GAGTCTCAAAACTATGGCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCC 8949 || || | ||| ||||| ||||| || || |||||||| ||||| || || |||||||| Sbjct 40794 GAATCACCAAATTATGGATACAAATTTGGACAAGAAGAAGAAACATATAATATTGTTGCT 40853 Query 8950 GCTCATGGCTACTTTGGTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAGC 9009 ||||| || || || || | || || || ||||| ||| |||||| || || | Sbjct 40854 GCTCACGGATATTTCGGAAGATTAATTTTTCAATACGCAAGTTTTAATAACTCACGTTCA 40913 Query 9010 TTGCATTTCTTCCTCGCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTC 9069 || || |||||| | ||||| ||||| || || ||||| ||||| || || | || | Sbjct 40914 TTACACTTCTTCTTAGCTGCATGGCCAGTAGTTGGAATTTGGTTAACTGCATTAGGAATT 40973 Query 9070 TCGACCATGGCTTTCAACCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACAA 9129 || ||||| || ||| | || || || ||||| || || || ||||| || | ||| Sbjct 40974 AGTACAATGGCCTTTAACTTAAACGGATTTAACTTTAATCAATCGATTATTGATAGCCAA 41033 Query 9130 GGACGAGTGCTCAACACCTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGTC 9189 ||| |||| | ||||| |||||||| | | ||| | ||| || || || ||||| Sbjct 41034 GGAAGAGTAATTAACACTTGGGCAGATATTGTAAACAGAGCAAATCTTGGAATCGAAGTA 41093 Query 9190 ATGCACGAAAGAAACGCACACAACTTCCCGCTTGACCTTGC 9230 ||||| ||| | || || || |||||||| | || ||||| Sbjct 41094 ATGCATGAACGTAATGCTCATAACTTCCCATTAGATCTTGC 41134 Score = 435 bits (482), Expect = 3e-117 Identities = 705/1010 (70%), Gaps = 8/1010 (1%) Strand=Plus/Plus Query 9827 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTCTGGACTACTTCTTTTT 9886 ||||||||||| ||| ||| | ||||| ||||| || |||||||| || | | ||| Sbjct 28586 GATGACTGGCTAAAAAAAGACAGATTTGTATTTGTAGGATGGTCTGGTTTATTATTATTT 28645 Query 9887 CCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACGTTTGTCACGAGTTGG 9946 || || ||| | || | || || ||| ||||||| | || ||||| || |||| Sbjct 28646 CCGTGCGCGTATTTAGCTCTAGGAGGATGGTTTACTGGAATCACATTTGTTACCTCTTGG 28705 Query 9947 TACACTCACGGACTTGCAAGTAGTTACCTT---GAGGGTGCTAATTTCCTTACAGCGGCT 10003 || || || || | || ||| | | || || ||| |||||| | || || ||| Sbjct 28706 TATACCCATGGCTTAGC---TAGCTCCTTTTTAGAAGGTTGTAATTTTTTAACGGCTGCT 28762 Query 10004 GTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 10063 || ||||| || ||| || |||||| |||||| | ||||| | ||||| || || | Sbjct 28763 GTTTCAACACCAGCTAATAGTATGGGACATTCTTTACTTCTTTTATGGGGACCAGAAGCG 28822 Query 10064 CAGGGAGATTTCGTCCGC-TGGATCCAGCTTGGGGGACTCTGGGCTTTTGTGGCGCTCCA 10122 || ||| |||| || | ||| | | |||| || || ||| | ||||| || | || Sbjct 28823 CAAGGAAATTTT-TCTGTATGGTTTAAAATTGGAGGTCTTTGGACATTTGTTGCCTTACA 28881 Query 10123 CGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGAGATTAATTGG 10182 |||||| || || |||| || ||| ||||| || ||||| | || ||||| | || Sbjct 28882 CGGAGCTTTTGCACTAATTGGATTTTGCTTACGACAATTTGAAATTGCTCGATTAGTAGG 28941 Query 10183 AATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGTCAGTGTTTT 10242 ||| ||||||||||||||| | || ||||| | || || || ||||||| ||||| Sbjct 28942 AATTCGACCTTACAATGCTTTAGCATTTTCAGCACCGATCGCCATTTTTGTTTCCGTTTT 29001 Query 10243 CCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGCGTCGCGGC 10302 | | ||||| | || || | || ||||| ||||| || ||||| || || || || Sbjct 29002 TTTACTTTATCCTTTAGGGCAAGCAAGCTGGTTTTTTGCACCAAGTTTTGGTGTTGCAGC 29061 Query 10303 GATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCA 10362 ||||| || || | || ||| | || || || ||||||||||| | ||||| ||||| Sbjct 29062 AATTTTTCGATTTTTACTATTCTTACAAGGATTCCATAATTGGACATTAAATCCATTCCA 29121 Query 10363 TATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCACGGAGTCAC 10422 |||||||||||||||||| || | |||| ||| | |||| ||||| || || | || Sbjct 29122 TATGATGGGAGTTGCTGGAGTATTAGGAGCTGCGTTACTATGTGCAATTCATGGTGCTAC 29181 Query 10423 TGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAAGCTTTTGATAG 10482 ||| ||||| || |||||| ||||||| || |||||| || || | ||| ||| Sbjct 29182 TGTTGAAAATACTCTTTATGAAGATGGAGATGCAGCAAATACATTTAGAGCCTTTACCCC 29241 Query 10483 CACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATT 10542 |||||| ||||| || ||||| |||||||| || ||| | || ||||| || || || Sbjct 29242 TACTCAATCGGAAGAAACATATTCCATGGTTACAGCCAACAGATTTTGGTCACAAATTTT 29301 Query 10543 TGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTAT 10602 |||| | |||||| ||||||| | ||| | || || |||||||| ||||| ||||| | Sbjct 29302 TGGAGTAGCTTTTTCCAATAAAAGATGGTTACACTTTTTTATGCTATTTGTTCCTGTAAC 29361 Query 10603 GGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGA 10662 ||| | ||| | | || ||||| | || ||||| | || | || || || || Sbjct 29362 CGGTTTATGGGCAAGCGCAATAGGAATTGTAGGACTTGCATTAAACTTACGCGCCTATGA 29421 Query 10663 TTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAA 10722 ||| | || ||||| | | || |||||||||| ||||| || || |||||||| || Sbjct 29422 CTTTATTTCGCAAGAATTACGAGCAGCAGAAGATCCGGAATTCGAAACATTCTATACAAA 29481 Query 10723 GAATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCAGTTGACCAACCACACGA 10782 ||||| || | || ||||| | | ||||||||| || ||||| ||||| || Sbjct 29482 AAATATTATTTTAAATGAAGGAATAAGATTATGGATGGCTGCACAAGACCAGCCACATGA 29541 Query 10783 AAGCTTTGTTTTCCCAGAAGAAGTTCTTCCTAGAGGTAATGCACTGTGAT 10832 || | | | || |||||||| || | || | || || || || |||| Sbjct 29542 AAATTATATATTTCCAGAAGAGGTATTACCACGTGGAAACGCGCTTTGAT 29591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516466022760000