Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_019544.1 Length=49335 Score E Sequences producing significant alignments: (Bits) Value seq1501 136 1e-27 >seq1501 Length=377221 Score = 136 bits (150), Expect = 1e-27 Identities = 263/387 (68%), Gaps = 6/387 (2%) Strand=Plus/Plus Query 45468 TCTTAGAAAACGGCGTGGAGAAAGAAGATCGGACGGGAACAGGCACATTGTCGGTGTTCG 45527 |||| || ||||||||| || | ||| || |||||||| ||||| | || |||| Sbjct 69625 TCTTCGAGCACGGCGTGGCCAAGGGAGACCGCACGGGAACGGGCACGCGGAGCGTCTTCG 69684 Query 45528 GCCGTCAGCTGCGCTTTAACTTGCAGGACGGATTCCCGCTCGTGACGACGAAAAAGTTGC 45587 | | |||| |||| || | || | || ||||||||||||||||||||||| ||| ||| Sbjct 69685 GTCATCAGATGCGATTCGATCTGAACGAGGGATTCCCGCTCGTGACGACGAAGAAGGTGC 69744 Query 45588 ATATCCGCTCGATCATTTATGAACTGCTCTGGTTTTTAAAAGGCGATACGAATGTTCGCT 45647 || | |||||||| || ||||| ||||| | || || |||| || | Sbjct 69745 ATCTGAAGTCGATCATCCTGGAGCTGCTGTGGTTCCTGCGCGGGGACTCGAACGTCAAGT 69804 Query 45648 ATTTGCAGGAGAATGGTGTGACGATTTGGGACGAGTGGGCCGATGAAAACGGCGATCTCG 45707 |||||||| || ||||| |||||||||||||| || |||| || || | Sbjct 69805 GGTTGCAGGAACGCGGCTGCACGATCTGGGACGAGTGGGCGCGCGAGGACGGTGACCTGG 69864 Query 45708 GCCCAATCTACGGCGCGCAATGGCGGTCGTGG---AAAGGGGCTGACGGGAAAACGGTCG 45764 | || | ||||||| |||||||||| ||| || | || | ||| | || | Sbjct 69865 GGCCGGTGTACGGCGTGCAATGGCGGAGCTGGCCCAAGGCGGGCGGCGGCCA---TGTGG 69921 Query 45765 ACCAAATTGCGGCGGTCTTTAAGGAAATCAAGCGCAACCCGAACTCGCGGCGGTTGCTTG 45824 |||| || || | ||| | ||| | | ||| ||||||| | ||||| ||| | | | Sbjct 69922 ACCAGATCGCCGAGGTGGTGAAGCAGCTGAAGGCCAACCCGGATTCGCGCCGGATCATCG 69981 Query 45825 TGAGCGCGTGGAACGTGGCAAAGTTGG 45851 || |||||||||||||| || ||| Sbjct 69982 TGTCGGCGTGGAACGTGGCGGAGCTGG 70008 Score = 131 bits (144), Expect = 5e-26 Identities = 239/350 (68%), Gaps = 0/350 (0%) Strand=Plus/Plus Query 45883 CTTTCAGTTTTACGTCGCGAATGGCCGGTTGTCATGCATGTGGCAACAGCGTTCTGTCGA 45942 ||| ||||| ||||| ||| | || |||||| ||| | | | ||||| | || Sbjct 113714 CTTCCAGTTCTACGTGGCGGACGGGAAGTTGTCGTGCCAGCTGTACCAGCGCAGCGCGGA 113773 Query 45943 TACATTTCTAGGATTGCCGTTTAACATCGCTAGCTATGCGCTGTTGACACATATGGTTGC 46002 | || || || ||||||| |||||||| ||||| |||||| |||| || ||| | || Sbjct 113774 CATCTTCCTGGGCGTGCCGTTCAACATCGCGAGCTACGCGCTGCTGACGCAGATGCTGGC 113833 Query 46003 CCAACAATGCGACCTCGATGTCGGCGAACTCATTTTCACCGGCGGCGACGTCCATTTGTA 46062 || ||||||| || | |||| || |||| | || ||||| ||| ||| | || Sbjct 113834 GCAGCAATGCGGACTGGGGCTCGGGGACTTCATCTGGACGGGCGGGGACTGCCACATCTA 113893 Query 46063 CAAAAATCATCTGGAACAAGCGAAACTGCAGCTGACGCGCGAGCCGCGCCCGCTGCCGAA 46122 | |||||| | || || | | | ||||||| ||||||||||| || |||| Sbjct 113894 CGCAAATCACTTCGAGCAGGTGCAGACGCAGCTGGCGCGCGAGCCGTATGCGTACCCGAC 113953 Query 46123 GCTCGTGATCAAACGGAAGCCGCCGTCTATCTTTGACTATGAATACGAGGATTTTGAATT 46182 | | |||||||| || ||||| |||| ||||| ||||| || | |||||| || || | Sbjct 113954 GATGGTGATCAAGCGCCAGCCGGCGTCGATCTTCGACTACGAGTTCGAGGACTTCGAGCT 114013 Query 46183 TGTCGGCTATGACCCGCACCCGGCGATTAAGGCTCCTGTATCCGTTTGAG 46232 | ||| | | ||| ||||||| ||||| || || | || |||| Sbjct 114014 GCAGGACTACCAGCACCACGCGGCGATCAAGGCGCCGGTGGCGGTGTGAG 114063 Score = 82.4 bits (90), Expect = 2e-11 Identities = 168/247 (68%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 45959 CCGTTTAACATCGCTAGCTATGCGCTGTTGACACAT-ATGGTTGCCCAACAATGCGACCT 46017 ||||| || ||||| || ||||| || | || || ||| | ||||| || |||| | Sbjct 70754 CCGTTCAATATCGCCAGTTATGCACTACTT-CAGATGATGCTCGCCCAGCAGTGCGGTTT 70812 Query 46018 CGATGTCGGCGAACTCATTTTCACCGGCGGCGACGTCCATTTGTACAAAAATCATCTGGA 46077 || |||||| || ||| |||||||||||||| || | |||| |||||| | || Sbjct 70813 GGAACCCGGCGATTTCGTTTGGACCGGCGGCGACGTGCACATCTACAGCAATCATTTCGA 70872 Query 46078 ACAAGCGAAACTGCAGCTGACGCGCGAGCCGCGCCCGCTGCCGAAGCTCGTGATCAAACG 46137 |||| ||| ||||| || |||| || | || ||||| |||||| | ||| || Sbjct 70873 CCAAGTGAAGTTGCAGATGTCGCGAGACACTCGTCCGCTTCCGAAGATGAACATCCTGCG 70932 Query 46138 GAAGCCGCCGTCTATCTTTGACTATGAATACGAGGATTTTGAATTTGTCGGCTATGACCC 46197 ||||| || ||| |||||| |||||||| | || || ||| ||||| Sbjct 70933 AAAGCCAGAATCCATCAATGACTACCGTCTTGAGGATTTCCAGTTGACCGACTACGACCC 70992 Query 46198 GCACCCG 46204 ||| ||| Sbjct 70993 GCATCCG 70999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157746344335810